WormBase Tree Display for Gene: WBGene00021369

WBGene00021369 SMap: S_parent: Sequence: Y37E11AR
  Identity: Version: 2
    Name: CGC_name: siah-1 Person_evidence: WBPerson3411
      Sequence_name: Y37E11AR.2
      Molecular_name: Y37E11AR.2
        Y37E11AR.2.1
        CE21549
      Other_name: Y37E11AR.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y37E11AR.d Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y37E11AR.2 Accession_evidence: NDB BX284604
      Public_name: siah-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 02 Feb 2007 10:20:45 WBPerson2970 Name_change: CGC_name: siah-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: siah
    Allele: WBVar00421861
      WBVar00421862
      WBVar00421863
      WBVar00421864
      WBVar00421865
      WBVar02020450
      WBVar02003781
      WBVar02003782
      WBVar01498626
      WBVar02003783
      WBVar01966020
      WBVar01966021
      WBVar00571633
      WBVar01492397
      WBVar01492398
      WBVar02047122
      WBVar00187847
      WBVar00187848
      WBVar00187849
      WBVar01668568
      WBVar01668569
      WBVar01668570
      WBVar01499633
      WBVar00250928
      WBVar01838992
      WBVar00900513
      WBVar00900514
      WBVar00900515
      WBVar00900516
      WBVar00900517
      WBVar00900518
      WBVar00900519
      WBVar00900520
      WBVar00900521
      WBVar00900522
      WBVar00900523
      WBVar00900524
      WBVar00900525
      WBVar00900526
      WBVar00900527
      WBVar00900528
      WBVar00900529
      WBVar00900530
      WBVar01997190
      WBVar00900531
      WBVar00900532
      WBVar00900533
      WBVar00900534
      WBVar00900535
      WBVar02097930
      WBVar00900536
      WBVar00900537
      WBVar01499305
      WBVar01496556
      WBVar02013495
    Strain: WBStrain00003082
    RNASeq_FPKM (74)
    GO_annotation (14)
    Ortholog (30)
    Structured_description: Automated_description: Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Involved in programmed cell death involved in cell development. Predicted to be located in cytoplasm. Expressed in AIYL; AIYR; and tail. Is an ortholog of human SIAH1 (siah E3 ubiquitin protein ligase 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: Y37E11AR.2
    Corresponding_transcript: Y37E11AR.2.1
    Other_sequence: HGC05391_1
      EX559403.1
      ES566486.1
      TSC11158_1
      Hbac_isotig03220
      FK807488.1
      NB06993
      JI173128.1
      FK801086.1
      CR01186
      CBC03941_1
      Dviv_isotig16717
      AE02514
      MJ04019
      GR17965
      XI05414
      MJC01848_1
      HGC06879_1
      MHC02973_1
      Tcir_isotig04686
      MI04792
      BUC00365_1
      AYC03624_1
      CJC12469_1
      FC548375.1
      EY470209.1
      Name_isotig08922
      MIC03651_1
      GR17964
      JI462744.1
      Tcir_isotig04687
      HG01052
      MH06544
      MJ02745
      Acan_isotig07861
      CR06695
      HG07011
      EX554667.1
      Oden_isotig10112
      FC553068.1
      PPC03009_1
      NBC06337_1
      MI05491
      ACC09620_1
      PPC20703_1
      MHC11692_1
      MJC03152_1
      GRC05186_1
      CRC06624_1
      Dviv_isotig16716
      XI05013
      Tcir_isotig21684
      XIC03980_1
      Oden_isotig10111
    Associated_feature: WBsf996045
  Experimental_info: RNAi_result: WBRNAi00055909 Inferred_automatically: RNAi_primary
      WBRNAi00082220 Inferred_automatically: RNAi_primary
      WBRNAi00075839 Inferred_automatically: RNAi_primary
      WBRNAi00036802 Inferred_automatically: RNAi_primary
      WBRNAi00020226 Inferred_automatically: RNAi_primary
      WBRNAi00082227 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram27
      Chronogram1880
      Expr6933
      Expr6934
      Expr10090
      Expr1025211
      Expr1039332
      Expr1159430
      Expr2015813
      Expr2034046
    Drives_construct: WBCnstr00003296
      WBCnstr00004571
      WBCnstr00015062
      WBCnstr00024574
    Construct_product: WBCnstr00024574
    Microarray_results (17)
    Expression_cluster (168)
    Interaction (90)
  Map_info: Map: IV Position: -2.42817 Error: 0.025563
    Positive: Positive_clone: Y37E11AR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00006488
    WBPaper00037327
    WBPaper00038491
    WBPaper00038821
    WBPaper00040433
    WBPaper00042635
    WBPaper00055090
    WBPaper00056902
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene