WormBase Tree Display for Gene: WBGene00014222
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WBGene00014222 | SMap | S_parent | Sequence | ZK1098 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | trpp-3 | Person_evidence | WBPerson3188 | |||||
Sequence_name | ZK1098.5 | ||||||||
Molecular_name | ZK1098.5 | ||||||||
ZK1098.5.1 | |||||||||
CE00368 | |||||||||
Other_name | CELE_ZK1098.5 | Accession_evidence | NDB | BX284603 | |||||
Public_name | trpp-3 | ||||||||
DB_info | Database | AceView | gene | 3K615 | |||||
WormQTL | gene | WBGene00014222 | |||||||
WormFlux | gene | WBGene00014222 | |||||||
NDB | locus_tag | CELE_ZK1098.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00014222|UniProtKB=P34605 | |||||||
family | PTHR13048 | ||||||||
NCBI | gene | 176344 | |||||||
RefSeq | protein | NM_066699.7 | |||||||
SwissProt | UniProtAcc | P34605 | |||||||
TREEFAM | TREEFAM_ID | TF300091 | |||||||
UniProt_GCRP | UniProtAcc | P34605 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 08 Aug 2013 16:41:57 | WBPerson2970 | Name_change | CGC_name | trpp-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | trpp | ||||||||
Allele | WBVar02156679 | ||||||||
WBVar01500260 | |||||||||
WBVar00405531 | |||||||||
WBVar00405532 | |||||||||
WBVar01499774 | |||||||||
WBVar02019030 | |||||||||
WBVar01629464 | |||||||||
WBVar01629465 | |||||||||
WBVar01447581 | |||||||||
WBVar01629466 | |||||||||
WBVar00100916 | |||||||||
WBVar00851001 | |||||||||
WBVar00851002 | |||||||||
WBVar00851003 | |||||||||
WBVar00851004 | |||||||||
WBVar00851005 | |||||||||
WBVar00851006 | |||||||||
WBVar00851007 | |||||||||
WBVar00851008 | |||||||||
WBVar00851009 | |||||||||
WBVar00851010 | |||||||||
Strain | WBStrain00051448 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (18) | |||||||||
Contained_in_operon | CEOP3596 | ||||||||
Ortholog (37) | |||||||||
Structured_description | Automated_description | Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle and protein secretion. Predicted to be located in cis-Golgi network membrane and cytosol. Predicted to be part of TRAPP complex. Is an ortholog of human TRAPPC3 (trafficking protein particle complex subunit 3). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK1098.5 | |||||||
Corresponding_transcript | ZK1098.5.1 | ||||||||
Other_sequence | Acan_isotig05067 | ||||||||
Oden_isotig07303 | |||||||||
HG11869 | |||||||||
Tcir_isotig05201 | |||||||||
HS01595 | |||||||||
EX014413.1 | |||||||||
Name_isotig00570 | |||||||||
HBC00732_1 | |||||||||
Tcir_isotig05202 | |||||||||
Tcir_isotig09161 | |||||||||
ES412501.1 | |||||||||
HBC01862_1 | |||||||||
HC01718 | |||||||||
ES411428.1 | |||||||||
HSC01646_1 | |||||||||
CRC06928_1 | |||||||||
Oden_isotig07302 | |||||||||
NB07127 | |||||||||
PPC05937_1 | |||||||||
EX911254.1 | |||||||||
EY465251.1 | |||||||||
Name_isotig07245 | |||||||||
Dviv_isotig13200 | |||||||||
Tcol_isotig08791 | |||||||||
HC07929 | |||||||||
NBC06142_1 | |||||||||
CBC01922_1 | |||||||||
Tcol_isotig08792 | |||||||||
HGC05500_1 | |||||||||
Acan_isotig05068 | |||||||||
HCC01433_1 | |||||||||
Hbac_isotig03978 | |||||||||
ACC03365_1 | |||||||||
PPC05914_1 | |||||||||
Associated_feature | WBsf659416 | ||||||||
WBsf225587 | |||||||||
Experimental_info | RNAi_result | WBRNAi00059113 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059112 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059111 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082858 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085570 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038148 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00002785 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00002662 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061602 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021807 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1024760 | ||||||||
Expr1036375 | |||||||||
Expr1162538 | |||||||||
Expr2017510 | |||||||||
Expr2035649 | |||||||||
Drives_construct | WBCnstr00029214 | ||||||||
Construct_product | WBCnstr00029214 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (84) | |||||||||
Interaction (111) | |||||||||
Map_info | Map | III | Position | 0.577842 | |||||
Positive | Positive_clone | ZK1098 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005423 | ||||||||
WBPaper00005747 | |||||||||
WBPaper00027766 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00060970 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |