WormBase Tree Display for Gene: WBGene00017926

WBGene00017926 SMap: S_parent: Sequence: F29C4
  Identity: Version: 2
    Name: CGC_name: cox-6C Person_evidence: WBPerson117
            WBPerson7169
      Sequence_name: F29C4.2
      Molecular_name: F29C4.2
        F29C4.2.1
        CE17720
      Other_name: CELE_F29C4.2 Accession_evidence: NDB BX284604
      Public_name: cox-6C
    DB_info: Database: AceView gene 4A881
        WormQTL gene WBGene00017926
        WormFlux gene WBGene00017926
        NDB locus_tag CELE_F29C4.2
        Panther gene CAEEL|WormBase=WBGene00017926|UniProtKB=O76367
          family PTHR12916
        NCBI gene 176828
        RefSeq protein NM_067466.7
        TREEFAM TREEFAM_ID TF353620
        TrEMBL UniProtAcc O76367
        UniProt_GCRP UniProtAcc O76367
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 05 Sep 2017 13:25:30 WBPerson2970 Name_change: CGC_name: cox-6C
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cox
    Allele: WBVar00878294
      WBVar00878295
      WBVar01499166
      WBVar00878296
      WBVar00878297
      WBVar00878298
      WBVar00878299
      WBVar00878300
      WBVar02156532
      WBVar01499048
      WBVar01499608
      WBVar01825516
      WBVar00414619
      WBVar01646804
      WBVar00414620
    RNASeq_FPKM (74)
    GO_annotation: 00038254
      00038255
      00038256
    Ortholog: WBGene00024854 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00059512 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00096081 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00141747 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00179102 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00161955 Caenorhabditis brenneri From_analysis: WormBase-Compara
      CBOVI.g11578 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g346 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14968 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5558 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7124 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5272 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g577 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g17792 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g29835 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g9680 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g13003 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00077.g3576 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g14688 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12271 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_16319 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014659 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14551 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8833 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40119000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9447 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00258805 Strongyloides ratti From_analysis: WormBase-Compara
      MGI:104614 Mus musculus From_analysis: Panther
            PhylomeDB
      RGD:620616 Rattus norvegicus From_analysis: Panther
            PhylomeDB
    Paralog: WBGene00013728 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00044290 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in mitochondrial inner membrane. Expressed in several structures, including body wall musculature; coelomocyte; pharynx; spermatheca; and vulva. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F29C4.2
    Corresponding_transcript: F29C4.2.1
    Other_sequence (54)
    Associated_feature: WBsf645736
      WBsf659858
      WBsf995068
      WBsf995069
      WBsf1016489
      WBsf1016490
      WBsf227802
  Experimental_info: RNAi_result (26)
    Expr_pattern: Expr13591
      Expr1010749
      Expr1037710
      Expr1149816
      Expr2003139
      Expr2021352
    Drives_construct: WBCnstr00026909
    Construct_product: WBCnstr00026909
    Microarray_results (29)
    Expression_cluster (117)
    Interaction (34)
  Map_info: Map: IV Position: -26.9276
    Positive: Positive_clone: F29C4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031194
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene