WormBase Tree Display for Gene: WBGene00011072
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WBGene00011072 | SMap | S_parent | Sequence | R06F6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | tag-209 | Person_evidence | WBPerson201 | |||||
Sequence_name | R06F6.11 | ||||||||
Molecular_name | R06F6.11 | ||||||||
R06F6.11.1 | |||||||||
CE01617 | |||||||||
Other_name | CELE_R06F6.11 | Accession_evidence | NDB | BX284602 | |||||
Public_name | tag-209 | ||||||||
DB_info | Database | AceView | gene | 2L77 | |||||
WormQTL | gene | WBGene00011072 | |||||||
WormFlux | gene | WBGene00011072 | |||||||
NDB | locus_tag | CELE_R06F6.11 | |||||||
NCBI | gene | 174660 | |||||||
RefSeq | protein | NM_063920.7 | |||||||
SwissProt | UniProtAcc | Q09418 | |||||||
UniProt_GCRP | UniProtAcc | Q09418 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 22 Dec 2004 16:59:41 | WBPerson2970 | Name_change | CGC_name | tag-209 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tag | ||||||||
Allele | WBVar00092685 | Inferred_automatically | From strain object: VC1004 | ||||||
WBVar01405609 | |||||||||
WBVar01499702 | |||||||||
WBVar01499347 | |||||||||
WBVar01499348 | |||||||||
WBVar01498435 | |||||||||
WBVar02068208 | |||||||||
WBVar02055662 | |||||||||
WBVar00092286 | |||||||||
WBVar01477943 | |||||||||
WBVar01498940 | |||||||||
WBVar00376937 | |||||||||
WBVar00764852 | |||||||||
WBVar00764853 | |||||||||
WBVar00764854 | |||||||||
WBVar00764855 | |||||||||
WBVar00764856 | |||||||||
Strain | WBStrain00035973 | ||||||||
WBStrain00036242 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00025960 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00216325 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
CBOVI.g6953 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP26.g1687 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g1173 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g9142 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g16563 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g2434 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g7707 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g27685 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g11551 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-tag-209 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold618.g6078 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
FL83_17669 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_005458 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_20341800 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g5807 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Enriched in AMshL; AMshR; amphid sheath cell; and intestine based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; age-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including D-glucose; bisphenol A; and Cry5B based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R06F6.11 | |||||||
Corresponding_transcript | R06F6.11.1 | ||||||||
Other_sequence | CJC03365_1 | ||||||||
Associated_feature (2) | |||||||||
Experimental_info | RNAi_result | WBRNAi00017490 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00034666 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00051394 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1026762 | ||||||||
Expr1155083 | |||||||||
Expr2017241 | |||||||||
Expr2035377 | |||||||||
Drives_construct | WBCnstr00030953 | ||||||||
Construct_product | WBCnstr00030953 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (155) | |||||||||
Interaction (16) | |||||||||
Map_info | Map | II | Position | 3.12684 | Error | 0.000244 | |||
Positive | Positive_clone | R06F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4880 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00064841 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |