WormBase Tree Display for Gene: WBGene00009812

WBGene00009812 SMap: S_parent: Sequence: F47B10
  Identity: Version: 2
    Name: CGC_name: suca-1 Person_evidence: WBPerson1983
            WBPerson261
      Sequence_name: F47B10.1
      Molecular_name: F47B10.1
        F47B10.1.1
        CE03351
      Other_name: CELE_F47B10.1 Accession_evidence: NDB BX284606
      Public_name: suca-1
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 08 Dec 2011 12:14:43 WBPerson2970 Name_change: CGC_name: suca-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: suca
    Allele: WBVar01499887
      WBVar01499888
      WBVar01759351
      WBVar01499710
      WBVar01184220
      WBVar01184221
      WBVar01184222
      WBVar01184223
      WBVar01184224
      WBVar01184225
      WBVar01184226
      WBVar01184227
      WBVar01184228
      WBVar01184229
      WBVar01184230
      WBVar01184231
      WBVar01184232
      WBVar01184233
      WBVar01184234
      WBVar01184235
      WBVar01498487
      WBVar00142548
      WBVar02156441
      WBVar00516202
      WBVar00516203
      WBVar00516204
      WBVar00516205
      WBVar00516206
      WBVar00516207
      WBVar01470988
      WBVar01470989
      WBVar01498960
      WBVar01500067
    Strain: WBStrain00051214
    RNASeq_FPKM (74)
    GO_annotation (24)
    Ortholog: WBGene00037153 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00058393 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00159345 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00130121 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00224438 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2994 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13330 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14394 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14423 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15938 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25222 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2110 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13775 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2752 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19924 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00795.g14182 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-suca-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13828 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00025.g1489 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01238 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023665 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01502 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21059 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0078100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19968 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00238788 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00255937 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00262856 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00298309 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301111 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003476 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0037643 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1963 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:11448 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1306775 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1309397 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00016844 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable succinate-CoA ligase (ADP-forming) activity. Predicted to be involved in succinyl-CoA metabolic process and tricarboxylic acid cycle. Located in mitochondrion. Expressed in anterior gonad arm. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 5. Is an ortholog of human SUCLA2 (succinate-CoA ligase ADP-forming subunit beta). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080124 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11448)
  Molecular_info: Corresponding_CDS: F47B10.1
    Corresponding_transcript: F47B10.1.1
    Other_sequence (91)
    Associated_feature: WBsf1006844
      WBsf1006845
      WBsf1023778
      WBsf1023779
      WBsf237909
  Experimental_info: RNAi_result: WBRNAi00106979 Inferred_automatically: RNAi_primary
      WBRNAi00015145 Inferred_automatically: RNAi_primary
      WBRNAi00066657 Inferred_automatically: RNAi_primary
      WBRNAi00047594 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13131
      Expr1013311
      Expr1034287
      Expr1151430
      Expr2017100
      Expr2035236
    Drives_construct: WBCnstr00031900
    Construct_product: WBCnstr00031900
    Microarray_results (20)
    Expression_cluster (179)
    Interaction (160)
  Map_info: Map: X Position: 2.68095
    Positive: Positive_clone: F47B10 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00041022
    WBPaper00049828
    WBPaper00055090
    WBPaper00061547
    WBPaper00065625
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene