WormBase Tree Display for Gene: WBGene00007919

WBGene00007919 SMap: S_parent: Sequence: C34C6
  Identity: Version: 2
    Name: CGC_name: cup-16 Paper_evidence: WBPaper00050677
          Person_evidence: WBPerson170
      Sequence_name: C34C6.7
      Molecular_name: C34C6.7a
        C34C6.7a.1
        CE43435
        C34C6.7b
        CE43411
        C34C6.7b.1
      Other_name: CELE_C34C6.7 Accession_evidence: NDB BX284602
      Public_name: cup-16
    DB_info: Database: AceView gene 2I997
        WormQTL gene WBGene00007919
        WormFlux gene WBGene00007919
        NDB locus_tag CELE_C34C6.7
        NCBI gene 174393
        RefSeq protein NM_001267252.2
            NM_001267253.3
        TrEMBL UniProtAcc B7WN89
            B7WN88
        UniProt_GCRP UniProtAcc B7WN88
    Species: Caenorhabditis elegans
    History: Version_change (2)
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cup
    Allele: WBVar01499702
      WBVar01498435
      WBVar01695950
      WBVar01499917
      WBVar01626964
      WBVar00751827
      WBVar00751828
      WBVar00751829
      WBVar00751830
      WBVar00751831
      WBVar00751832
      WBVar00751833
      WBVar00751834
      WBVar00751835
      WBVar00751836
      WBVar01252151
      WBVar00751837
      WBVar00751838
      WBVar00751839
      WBVar00174125
      WBVar01499423
      WBVar00174126
      WBVar02147491
      WBVar01308752
      WBVar01935121
      WBVar01604357
      WBVar01498940
      WBVar00104697
      WBVar00104698
    RNASeq_FPKM (74)
    GO_annotation: 00006496
      00006497
      00006498
      00006499
      00006500
    Ortholog: WBGene00032291 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00123059 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00072087 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      CSP26.g12844 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14328 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21937 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16719 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4220 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g8481 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18317 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-C34C6.7 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_05691.g35416 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_05691.g35417 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_04660 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_004876 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_20295610 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5324 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Involved in endocytosis and lysosomal protein catabolic process. Predicted to be located in lysosome. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C34C6.7a
      C34C6.7b
    Corresponding_CDS_history: C34C6.7:wp198
    Corresponding_transcript: C34C6.7a.1
      C34C6.7b.1
    Associated_feature: WBsf657989
      WBsf988799
      WBsf221805
  Experimental_info: RNAi_result: WBRNAi00041856 Inferred_automatically: RNAi_primary
      WBRNAi00011583 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022610
      Expr1033433
      Expr1145874
      Expr2010594
      Expr2028834
    Drives_construct: WBCnstr00033382
    Construct_product: WBCnstr00033382
    Microarray_results (16)
    Expression_cluster (267)
    Interaction (170)
  Map_info: Map: II Position: 0.85112
    Positive: Positive_clone: C34C6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00050677
    WBPaper00062388
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene