WormBase Tree Display for Gene: WBGene00005014

WBGene00005014 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F54C4
  Identity: Version: 1
    Name: CGC_name: spt-4
      Sequence_name: F54C4.2
      Molecular_name: F54C4.2
        F54C4.2.1
        CE19891
      Other_name: CELE_F54C4.2 Accession_evidence: NDB BX284603
      Public_name: spt-4
    DB_info: Database: AceView gene 3A686
        WormQTL gene WBGene00005014
        WormFlux gene WBGene00005014
        NDB locus_tag CELE_F54C4.2
        Panther gene CAEEL|WormBase=WBGene00005014|UniProtKB=Q9TZ93
          family PTHR12882
        NCBI gene 175172
        RefSeq protein NM_064734.6
        SwissProt UniProtAcc Q9TZ93
        TREEFAM TREEFAM_ID TF300105
        UniProt_GCRP UniProtAcc Q9TZ93
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:37 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spt
    Allele: WBVar00794883
      WBVar00251542
      WBVar02124464
      WBVar01902722
      WBVar01902723
      WBVar01902724
      WBVar01500082
      WBVar00558362
      WBVar01398379
      WBVar01950947
      WBVar01478931
      WBVar01563769
      WBVar01398390
      WBVar01697631
      WBVar01697632
      WBVar01697633
      WBVar01697634
      WBVar01697635
      WBVar01697636
      WBVar01697637
      WBVar01697638
      WBVar01697639
      WBVar01697640
      WBVar01577530
      WBVar01577531
      WBVar01697641
      WBVar01697642
      WBVar01697643
      WBVar01697644
      WBVar01697645
      WBVar01697646
      WBVar01697647
      WBVar01498832
      WBVar01983458
      WBVar02106671
      WBVar02106672
      WBVar00025413
      WBVar00025418
      WBVar00025423
      WBVar01912407
      WBVar00387173
      WBVar00387174
      WBVar01387535
      WBVar01387538
      WBVar02122373
      WBVar02089439
      WBVar01270439
      WBVar02012508
      WBVar01961390
      WBVar02073953
      WBVar02101080
      WBVar00794877
      WBVar00794878
      WBVar00794879
      WBVar00794880
      WBVar00794881
      WBVar00794882
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP3004
    Ortholog: WBGene00023846 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00138849 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00085044 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00132271 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224606 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g5589 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11305 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11965 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12975 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22405 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20943 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12038 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21000 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1170 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6903 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-spt-4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g16726 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00847.g16053 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18619 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_011811 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07932 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g16325 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30324110 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g6698 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244964 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304735 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263235 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00265697 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000003295 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0028683 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040718-214 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:11467 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:107416 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1335090 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306372 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in chromatin organization and regulation of transcription elongation by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of DSIF complex. Is an ortholog of human SUPT4H1 (SPT4 homolog, DSIF elongation factor subunit). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54C4.2
    Corresponding_transcript: F54C4.2.1
    Other_sequence (30)
    Associated_feature (11)
    Transcription_factor: WBTranscriptionFactor000605
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr1016142
      Expr1032497
      Expr1152058
      Expr2016099
      Expr2034334
    Microarray_results (19)
    Expression_cluster (92)
    Interaction (148)
  Map_info: Map: III Position: -27.1067 Error: 0.021373
    Positive: Positive_clone: F54C4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005411
    WBPaper00017762
    WBPaper00026643
    WBPaper00038491
    WBPaper00050162
    WBPaper00055090
    WBPaper00059520
    WBPaper00065308
  Remark: Sequence connection from [Blackwell K]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene