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WormBase Tree Display for Gene: WBGene00016677

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Name Class

WBGene00016677SMapS_parentSequenceC45G9
IdentityVersion1
NameSequence_nameC45G9.6
Molecular_nameC45G9.6a
C45G9.6a.1
CE54095
C45G9.6b
CE30634
C45G9.6b.1
Other_nameCELE_C45G9.6Accession_evidenceNDBBX284603
Public_nameC45G9.6
DB_infoDatabaseAceViewgene3G129
WormQTLgeneWBGene00016677
WormFluxgeneWBGene00016677
NDBlocus_tagCELE_C45G9.6
PanthergeneCAEEL|WormBase=WBGene00016677|UniProtKB=Q09279
familyPTHR33459
NCBIgene175684
RefSeqproteinNM_001379695.2
NM_171111.8
SwissProtUniProtAccQ09279
UniProt_GCRPUniProtAccQ09279
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar01656636
WBVar01489405
WBVar01263343
WBVar01263344
WBVar01837535
WBVar02152009
WBVar00825331
WBVar00825332
WBVar00825333
WBVar00825334
WBVar00825335
WBVar00825336
WBVar00825337
WBVar00825338
WBVar00825339
WBVar00825340
WBVar00825341
WBVar00825342
WBVar00825343
WBVar00825344
WBVar00825345
WBVar00825346
WBVar00825347
WBVar01628492
WBVar01541725
WBVar01644452
WBVar00059766
WBVar01644453
WBVar01644454
WBVar01644455
WBVar00059771
WBVar01722453
WBVar00397143
WBVar00397144
WBVar00397145
WBVar00397146
WBVar00397147
WBVar00397148
WBVar00397149
WBVar01938981
WBVar01500247
WBVar01500248
RNASeq_FPKM (74)
Ortholog (24)
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABplppppaa; ABprppppaa; ALN; rectal epithelial cell; and rectum based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including hydrogen sulfide; mianserin; and Zidovudine based on microarray and RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC45G9.6a
C45G9.6b
Corresponding_CDS_historyC45G9.6a:wp275
Corresponding_transcriptC45G9.6a.1
C45G9.6b.1
Other_sequenceCSC00582_1
FD514618.1
Associated_featureWBsf645141
WBsf658881
WBsf658882
WBsf992275
WBsf992276
WBsf224850
Experimental_infoRNAi_resultWBRNAi00000803Inferred_automaticallyRNAi_primary
WBRNAi00042555Inferred_automaticallyRNAi_primary
WBRNAi00005540Inferred_automaticallyRNAi_primary
Expr_patternExpr1024406
Expr1037167
Expr1146538
Expr2001664
Expr2019891
Drives_constructWBCnstr00027896
Construct_productWBCnstr00027896
Microarray_resultsSMD_C45G9.6
174481_at
187424_s_at
A_12_P104643
A_12_P117179
Aff_C45G9.6
GPL13394_WBGene00016677
GPL13914_C45G9.6
GPL14144_C45G9.6a_1102-1161_0.927_10_B
GPL14144_C45G9.6a_1209-1268_0.913_13_C
GPL14144_C45G9.6a_1462-1521_0.961_1_A
GPL19516_CGZ0009036
GPL19516_CGZ0009037
GPL21109_C45G9.6a
GPL21109_C45G9.6b
GPL8304_CE_WBGene00016677_A
GPL8304_CE_WBGene00016677_B
GPL8673_C45G9_6aP00965
GPL8673_C45G9_6aP01262
GPL8673_C45G9_6aP01538
GPL8673_C45G9_6bP00017
GPL8673_C45G9_6bP00337
GPL8673_C45G9_6bP00388
GPL9450_C45G9.6a
GPL9450_C45G9.6b
cea2.d.17001
cea2.p.59625
Expression_cluster (160)
InteractionWBInteraction000032461
WBInteraction000208610
WBInteraction000221009
WBInteraction000267702
Map_infoPositivePositive_cloneC45G9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-2.2086
MethodGene