WormBase Tree Display for Gene: WBGene00012853
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| WBGene00012853 | SMap | S_parent | Sequence | Y44A6D | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tpan-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y44A6D.2 | ||||||||
| Molecular_name | Y44A6D.2 | ||||||||
| Y44A6D.2.1 | |||||||||
| CE19160 | |||||||||
| Other_name | CELE_Y44A6D.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | tpan-1 | ||||||||
| DB_info | Database | AceView | gene | 5V259 | |||||
| WormQTL | gene | WBGene00012853 | |||||||
| WormFlux | gene | WBGene00012853 | |||||||
| NDB | locus_tag | CELE_Y44A6D.2 | |||||||
| NCBI | gene | 180360 | |||||||
| RefSeq | protein | NM_075610.6 | |||||||
| TREEFAM | TREEFAM_ID | TF319510 | |||||||
| TrEMBL | UniProtAcc | Q9XXE2 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XXE2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 16 Feb 2022 12:47:28 | WBPerson51134 | Name_change | CGC_name | tpan-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tpan | ||||||||
| Allele | WBVar02158540 | ||||||||
| WBVar01756759 | |||||||||
| WBVar01499709 | |||||||||
| WBVar01978804 | |||||||||
| WBVar01678803 | |||||||||
| WBVar01678804 | |||||||||
| WBVar01600048 | |||||||||
| WBVar00599040 | |||||||||
| WBVar01499446 | |||||||||
| WBVar00240848 | |||||||||
| WBVar01500000 | |||||||||
| WBVar01498549 | |||||||||
| WBVar01499299 | |||||||||
| WBVar01489546 | |||||||||
| WBVar00273854 | |||||||||
| WBVar00491193 | |||||||||
| WBVar00491194 | |||||||||
| WBVar00491195 | |||||||||
| WBVar00491196 | |||||||||
| WBVar00491197 | |||||||||
| WBVar00073919 | |||||||||
| WBVar00073920 | |||||||||
| WBVar02050382 | |||||||||
| WBVar02026490 | |||||||||
| WBVar02026491 | |||||||||
| WBVar01109545 | |||||||||
| WBVar01109546 | |||||||||
| WBVar01109547 | |||||||||
| WBVar01109548 | |||||||||
| WBVar01109549 | |||||||||
| WBVar01109550 | |||||||||
| WBVar01109551 | |||||||||
| WBVar01109552 | |||||||||
| Strain | WBStrain00051866 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (22) | |||||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell; intestine; neurons; and retrovesicular ganglion based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and eat-2 based on proteomic; microarray; and RNA-seq studies. Is affected by sixteen chemicals including rotenone; sesamin; and iron oxide nanoparticle based on RNA-seq; microarray; and proteomic studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y44A6D.2 | |||||||
| Corresponding_transcript | Y44A6D.2.1 | ||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf647764 | ||||||||
| WBsf1003647 | |||||||||
| WBsf1022015 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000858 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020580 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056549 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037073 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002038 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019748 | ||||||||
| Expr1160022 | |||||||||
| Expr2007529 | |||||||||
| Expr2025766 | |||||||||
| Drives_construct | WBCnstr00029815 | ||||||||
| Construct_product | WBCnstr00029815 | ||||||||
| Microarray_results | SMD_Y44A6D.2 | ||||||||
| 180617_s_at | |||||||||
| A_12_P118261 | |||||||||
| Aff_Y44A6D.2 | |||||||||
| GPL13394_WBGene00012853 | |||||||||
| GPL13914_Y44A6D.2 | |||||||||
| GPL14144_Y44A6D.2_178-237_0.687_20_C | |||||||||
| GPL14144_Y44A6D.2_22-81_0.910_1_A | |||||||||
| GPL14144_Y44A6D.2_97-156_0.895_3_B | |||||||||
| GPL19516_CGZ0046431 | |||||||||
| GPL21109_Y44A6D.2 | |||||||||
| GPL3518_CE19160 | |||||||||
| GPL8304_CE_WBGene00012853_A | |||||||||
| GPL8304_CE_WBGene00012853_B | |||||||||
| GPL8673_Y44A6D_2P00058 | |||||||||
| GPL8673_Y44A6D_2P00127 | |||||||||
| GPL8673_Y44A6D_2P00172 | |||||||||
| GPL9450_Y44A6D.2 | |||||||||
| cea2.c.39715 | |||||||||
| Expression_cluster (275) | |||||||||
| Interaction | WBInteraction000376125 | ||||||||
| WBInteraction000383303 | |||||||||
| WBInteraction000389067 | |||||||||
| WBInteraction000428253 | |||||||||
| WBInteraction000580835 | |||||||||
| WBInteraction000583623 | |||||||||
| WBInteraction000583994 | |||||||||
| Map_info | Map | V | Position | 25.2229 | |||||
| Positive | Positive_clone | Y44A6D | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00040135 | ||||||||
| WBPaper00062568 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
