WormBase Tree Display for Gene: WBGene00009783
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WBGene00009783 | SMap | S_parent | Sequence | F46C5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | rer-1 | Person_evidence | WBPerson3858 | |||||
Sequence_name | F46C5.8 | ||||||||
Molecular_name | F46C5.8 | ||||||||
F46C5.8.1 | |||||||||
CE03349 | |||||||||
Other_name | CELE_F46C5.8 | Accession_evidence | NDB | BX284602 | |||||
Public_name | rer-1 | ||||||||
DB_info | Database | AceView | gene | 2J103 | |||||
WormQTL | gene | WBGene00009783 | |||||||
WormFlux | gene | WBGene00009783 | |||||||
NDB | locus_tag | CELE_F46C5.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00009783|UniProtKB=P52879 | |||||||
family | PTHR10743 | ||||||||
NCBI | gene | 174410 | |||||||
RefSeq | protein | NM_001381540.2 | |||||||
SwissProt | UniProtAcc | P52879 | |||||||
TREEFAM | TREEFAM_ID | TF300029 | |||||||
UniProt_GCRP | UniProtAcc | P52879 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 15 Mar 2007 17:00:31 | WBPerson2970 | Name_change | CGC_name | rer-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rer | ||||||||
Allele | WBVar01499702 | ||||||||
WBVar01784261 | |||||||||
WBVar01495848 | |||||||||
WBVar01498435 | |||||||||
WBVar01376656 | |||||||||
WBVar01499917 | |||||||||
WBVar00317466 | |||||||||
WBVar02109786 | |||||||||
WBVar02152024 | |||||||||
WBVar01499017 | |||||||||
WBVar02002872 | |||||||||
WBVar01696006 | |||||||||
WBVar01474177 | |||||||||
WBVar01252262 | |||||||||
WBVar00372846 | |||||||||
WBVar00372847 | |||||||||
WBVar00752459 | |||||||||
WBVar00752460 | |||||||||
WBVar00752461 | |||||||||
WBVar00752462 | |||||||||
WBVar00752463 | |||||||||
WBVar00752464 | |||||||||
WBVar00752465 | |||||||||
WBVar00752466 | |||||||||
WBVar00752467 | |||||||||
WBVar00752468 | |||||||||
WBVar01935133 | |||||||||
WBVar01498940 | |||||||||
WBVar02040254 | |||||||||
WBVar01438902 | |||||||||
WBVar01438903 | |||||||||
Strain | WBStrain00003665 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (38) | |||||||||
Structured_description | Automated_description | Involved in IRE1-mediated unfolded protein response. Predicted to be located in endoplasmic reticulum and membrane. Is an ortholog of human RER1 (retention in endoplasmic reticulum sorting receptor 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F46C5.8 | |||||||
Corresponding_transcript | F46C5.8.1 | ||||||||
Other_sequence (51) | |||||||||
Associated_feature | WBsf644507 | ||||||||
WBsf221816 | |||||||||
WBsf221817 | |||||||||
WBsf221818 | |||||||||
WBsf221819 | |||||||||
WBsf221820 | |||||||||
Experimental_info | RNAi_result | WBRNAi00015079 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00047512 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117193 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032357 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram700 | ||||||||
Chronogram1027 | |||||||||
Expr6087 | |||||||||
Expr6088 | |||||||||
Expr13597 | |||||||||
Expr1018655 | |||||||||
Expr1034277 | |||||||||
Expr1151351 | |||||||||
Expr2015300 | |||||||||
Expr2033534 | |||||||||
Drives_construct | WBCnstr00004063 | ||||||||
WBCnstr00004102 | |||||||||
WBCnstr00031924 | |||||||||
Construct_product | WBCnstr00008681 | ||||||||
WBCnstr00008688 | |||||||||
WBCnstr00021445 | |||||||||
WBCnstr00031924 | |||||||||
Antibody | WBAntibody00002662 | ||||||||
Microarray_results | SMD_F46C5.8 | ||||||||
192220_at | |||||||||
A_12_P102467 | |||||||||
A_12_P155815 | |||||||||
A_12_P155816 | |||||||||
Aff_F46C5.8 | |||||||||
GPL13394_WBGene00009783 | |||||||||
GPL13914_F46C5.8 | |||||||||
GPL14144_F46C5.8_208-267_0.933_3_B | |||||||||
GPL14144_F46C5.8_299-358_0.914_6_C | |||||||||
GPL14144_F46C5.8_523-582_0.958_1_A | |||||||||
GPL19516_CGZ0022078 | |||||||||
GPL19516_CGZ0022079 | |||||||||
GPL21109_F46C5.8.1 | |||||||||
GPL3518_CE03349 | |||||||||
GPL8304_CE_WBGene00009783_A | |||||||||
GPL8304_CE_WBGene00009783_B | |||||||||
GPL8304_CE_WBGene00009783_C | |||||||||
GPL8673_F46C5_8P00083 | |||||||||
GPL8673_F46C5_8P00341 | |||||||||
GPL8673_F46C5_8P00490 | |||||||||
GPL9450_F46C5.8 | |||||||||
cea2.c.12491 | |||||||||
Expression_cluster (107) | |||||||||
Interaction (37) | |||||||||
Map_info | Map | II | Position | 0.901758 | Error | 0.000789 | |||
Positive | Positive_clone | F46C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00043011 | |||||||||
WBPaper00047615 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00062289 | |||||||||
WBPaper00064057 | |||||||||
WBPaper00064375 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |