WormBase Tree Display for Gene: WBGene00004016

WBGene00004016 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 1
    Name: CGC_name: phf-5 Person_evidence: WBPerson564
      Sequence_name: Y54F10BM.14
      Molecular_name: Y54F10BM.14
        Y54F10BM.14.1
        CE33882
      Other_name: CELE_Y54F10BM.14 Accession_evidence: NDB BX284603
      Public_name: phf-5
    DB_info: Database: AceView gene 3D429
        WormQTL gene WBGene00004016
        WormFlux gene WBGene00004016
        NDB locus_tag CELE_Y54F10BM.14
        Panther gene CAEEL|WormBase=WBGene00004016|UniProtKB=G5EBY6
          family PTHR13120
        NCBI gene 3564851
        RefSeq protein NM_001027738.2
        TREEFAM TREEFAM_ID TF105627
        TrEMBL UniProtAcc G5EBY6
        UniProt_GCRP UniProtAcc G5EBY6
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: phf
    Allele: WBVar01701644
      WBVar02015000
      WBVar01401351
      WBVar01259279
      WBVar01259280
      WBVar02007573
      WBVar02086562
      WBVar01259282
      WBVar01259283
      WBVar01259285
      WBVar01259286
      WBVar01259287
      WBVar01259292
      WBVar01500082
      WBVar01259293
      WBVar00809075
      WBVar00809076
      WBVar00809077
      WBVar02101478
      WBVar00809078
      WBVar01396118
      WBVar02003214
      WBVar01900710
      WBVar01643415
      WBVar01565608
      WBVar01827115
      WBVar01912903
      WBVar02077727
      WBVar01912904
      WBVar01912905
      WBVar01479309
      WBVar02092477
      WBVar01912906
      WBVar01578626
      WBVar01912907
      WBVar01578627
      WBVar00028426
      WBVar01578628
      WBVar01578629
      WBVar00028431
      WBVar02041276
      WBVar00028436
      WBVar01989735
      WBVar00028441
      WBVar01498832
      WBVar01415593
      WBVar02111299
      WBVar02074054
      WBVar02074055
      WBVar00391766
      WBVar00391767
      WBVar00235884
      WBVar00235885
      WBVar02103219
      WBVar02103220
      WBVar02087955
      WBVar00097399
      WBVar00097400
      WBVar00097402
      WBVar00233323
      WBVar02012866
      WBVar02033980
      WBVar01802332
      WBVar01802333
      WBVar01802334
      WBVar00046893
      WBVar00046898
      WBVar01627794
      WBVar01709545
      WBVar00046903
      WBVar01709546
      WBVar01709547
      WBVar01709548
      WBVar02053151
      WBVar00046908
      WBVar02053152
      WBVar01540845
      WBVar00046913
      WBVar01327419
      WBVar01327420
      WBVar02112466
      WBVar00046918
      WBVar01327422
      WBVar01327423
      WBVar01548497
      WBVar01327424
      WBVar01548498
      WBVar02102345
      WBVar01548499
      WBVar01327425
      WBVar00046923
      WBVar01327429
      WBVar01327430
      WBVar00046928
      WBVar00046933
      WBVar01655672
      WBVar01962101
      WBVar01962103
      WBVar00046938
      WBVar01962104
      WBVar02049636
      WBVar02049637
      WBVar00046943
      WBVar01407850
      WBVar01407851
      WBVar00046948
      WBVar00046953
      WBVar02108254
      WBVar01785183
      WBVar01770983
      WBVar00046958
      WBVar01785184
      WBVar00046963
      WBVar02014997
      WBVar01701642
      WBVar02014998
      WBVar01999155
      WBVar01701643
      WBVar02014999
    Strain: WBStrain00006460
      WBStrain00055484
    RNASeq_FPKM (74)
    GO_annotation: 00010542
      00010543
      00010544
      00010545
      00010546
      00112195
    Contained_in_operon: CEOP3075
    Ortholog (34)
    Structured_description: Automated_description: Predicted to be involved in mRNA splicing, via spliceosome. Located in cytoplasm and nucleus. Expressed in body wall musculature; intestine; pharyngeal muscle cell; pharynx; and rectal muscle. Is an ortholog of human PHF5A (PHD finger protein 5A). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54F10BM.14
    Corresponding_transcript: Y54F10BM.14.1
    Other_sequence (66)
    Associated_feature: WBsf658509
      WBsf991497
      WBsf991498
      WBsf1014393
      WBsf224500
    Transcription_factor: WBTranscriptionFactor000668
  Experimental_info: RNAi_result: WBRNAi00022700 Inferred_automatically: RNAi_primary
      WBRNAi00022702 Inferred_automatically: RNAi_primary
      WBRNAi00117630 Inferred_automatically: RNAi_primary
      WBRNAi00022701 Inferred_automatically: RNAi_primary
      WBRNAi00117629 Inferred_automatically: RNAi_primary
      WBRNAi00106641 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2000
      Expr1024301
      Expr1031923
      Expr1160845
      Expr2014897
      Expr2033133
    Drives_construct: WBCnstr00000421
      WBCnstr00000431
    Antibody: WBAntibody00000558
    Microarray_results: A_12_P104804
      GPL13394_WBGene00004016
      GPL13914_Y54F10BM.14
      GPL14144_Y54F10BM.14_109-168_0.862_12_C
      GPL14144_Y54F10BM.14_181-240_0.946_1_A
      GPL14144_Y54F10BM.14_256-315_0.929_3_B
      GPL19516_CGZ0049115
      GPL21109_Y54F10BM.14
      GPL8304_CE_WBGene00004016_A
      GPL8304_CE_WBGene00004016_B
      GPL8673_Y54F10BM_14P00034
      GPL8673_Y54F10BM_14P00102
      GPL8673_Y54F10BM_14P00146
      GPL9450_Y54F10BM.1
      cea2.i.22048
    Expression_cluster (60)
    Interaction (97)
  Map_info: Map: III Position: -14.7412 Error: 0.009142
    Positive: Positive_clone: Y54F10BM Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005466
    WBPaper00027309
    WBPaper00038491
    WBPaper00055090
    WBPaper00065308
  Remark: phf-5 was previously connected to Y54F10BM.1 [Blasiar D][030411 ck1]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene