WormBase Tree Display for Gene: WBGene00005014

WBGene00005014 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F54C4
  Identity: Version: 1
    Name: CGC_name: spt-4
      Sequence_name: F54C4.2
      Molecular_name: F54C4.2
        F54C4.2.1
        CE19891
      Other_name: CELE_F54C4.2 Accession_evidence: NDB BX284603
      Public_name: spt-4
    DB_info: Database: AceView gene 3A686
        WormQTL gene WBGene00005014
        WormFlux gene WBGene00005014
        NDB locus_tag CELE_F54C4.2
        Panther gene CAEEL|WormBase=WBGene00005014|UniProtKB=Q9TZ93
          family PTHR12882
        NCBI gene 175172
        RefSeq protein NM_064734.6
        SwissProt UniProtAcc Q9TZ93
        TREEFAM TREEFAM_ID TF300105
        UniProt_GCRP UniProtAcc Q9TZ93
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:37 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spt
    Allele: WBVar00794883
      WBVar00251542
      WBVar02124464
      WBVar01902722
      WBVar01902723
      WBVar01902724
      WBVar01500082
      WBVar00558362
      WBVar01398379
      WBVar01950947
      WBVar01478931
      WBVar01563769
      WBVar01398390
      WBVar01697631
      WBVar01697632
      WBVar01697633
      WBVar01697634
      WBVar01697635
      WBVar01697636
      WBVar01697637
      WBVar01697638
      WBVar01697639
      WBVar01697640
      WBVar01577530
      WBVar01577531
      WBVar01697641
      WBVar01697642
      WBVar01697643
      WBVar01697644
      WBVar01697645
      WBVar01697646
      WBVar01697647
      WBVar01498832
      WBVar01983458
      WBVar02106671
      WBVar02106672
      WBVar00025413
      WBVar00025418
      WBVar00025423
      WBVar01912407
      WBVar00387173
      WBVar00387174
      WBVar01387535
      WBVar01387538
      WBVar02122373
      WBVar02089439
      WBVar01270439
      WBVar02012508
      WBVar01961390
      WBVar02073953
      WBVar02101080
      WBVar00794877
      WBVar00794878
      WBVar00794879
      WBVar00794880
      WBVar00794881
      WBVar00794882
    RNASeq_FPKM (74)
    GO_annotation (12)
    Contained_in_operon: CEOP3004
    Ortholog (35)
    Structured_description: Automated_description: Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in chromatin organization and regulation of transcription elongation by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of DSIF complex. Is an ortholog of human SUPT4H1 (SPT4 homolog, DSIF elongation factor subunit). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54C4.2
    Corresponding_transcript: F54C4.2.1
    Other_sequence (30)
    Associated_feature (11)
    Transcription_factor: WBTranscriptionFactor000605
  Experimental_info: RNAi_result (12)
    Expr_pattern: Expr1016142
      Expr1032497
      Expr1152058
      Expr2016099
      Expr2034334
    Microarray_results (19)
    Expression_cluster (92)
    Interaction: WBInteraction000009160
      WBInteraction000031401
      WBInteraction000043553
      WBInteraction000044802
      WBInteraction000103001
      WBInteraction000105290
      WBInteraction000107218
      WBInteraction000107231
      WBInteraction000109916
      WBInteraction000115181
      WBInteraction000119025
      WBInteraction000119312
      WBInteraction000121130
      WBInteraction000124721
      WBInteraction000127807
      WBInteraction000127829
      WBInteraction000130388
      WBInteraction000130389
      WBInteraction000130390
      WBInteraction000130391
      WBInteraction000130392
      WBInteraction000130393
      WBInteraction000130394
      WBInteraction000130395
      WBInteraction000130396
      WBInteraction000130397
      WBInteraction000130398
      WBInteraction000130399
      WBInteraction000130400
      WBInteraction000130401
      WBInteraction000130402
      WBInteraction000130403
      WBInteraction000130404
      WBInteraction000130405
      WBInteraction000130738
      WBInteraction000130890
      WBInteraction000131248
      WBInteraction000131339
      WBInteraction000131862
      WBInteraction000131974
      WBInteraction000132349
      WBInteraction000132422
      WBInteraction000132476
      WBInteraction000132567
      WBInteraction000147977
      WBInteraction000147983
      WBInteraction000169724
      WBInteraction000173853
      WBInteraction000180622
      WBInteraction000185091
      WBInteraction000185092
      WBInteraction000185093
      WBInteraction000185094
      WBInteraction000185095
      WBInteraction000185096
      WBInteraction000186553
      WBInteraction000191037
      WBInteraction000191038
      WBInteraction000191039
      WBInteraction000191040
      WBInteraction000191041
      WBInteraction000199054
      WBInteraction000199055
      WBInteraction000199056
      WBInteraction000199057
      WBInteraction000200125
      WBInteraction000202295
      WBInteraction000202296
      WBInteraction000202297
      WBInteraction000202298
      WBInteraction000202299
      WBInteraction000202300
      WBInteraction000202301
      WBInteraction000202302
      WBInteraction000202303
      WBInteraction000202304
      WBInteraction000202305
      WBInteraction000202306
      WBInteraction000202307
      WBInteraction000202308
      WBInteraction000202309
      WBInteraction000202310
      WBInteraction000204184
      WBInteraction000211585
      WBInteraction000223953
      WBInteraction000225027
      WBInteraction000231117
      WBInteraction000234904
      WBInteraction000245688
      WBInteraction000245690
      WBInteraction000246587
      WBInteraction000255180
      WBInteraction000255181
      WBInteraction000255182
      WBInteraction000270204
      WBInteraction000285846
      WBInteraction000289087
      WBInteraction000289088
      WBInteraction000289089
      WBInteraction000289090
      WBInteraction000289091
      WBInteraction000289092
      WBInteraction000289093
      WBInteraction000289094
      WBInteraction000289095
      WBInteraction000289096
      WBInteraction000289097
      WBInteraction000289098
      WBInteraction000289099
      WBInteraction000289100
      WBInteraction000289101
      WBInteraction000289102
      WBInteraction000291682
      WBInteraction000296571
      WBInteraction000300887
      WBInteraction000315902
      WBInteraction000329652
      WBInteraction000331392
      WBInteraction000345778
      WBInteraction000394971
      WBInteraction000402083
      WBInteraction000404840
      WBInteraction000407592
      WBInteraction000407593
      WBInteraction000407594
      WBInteraction000407595
      WBInteraction000407596
      WBInteraction000407597
      WBInteraction000407598
      WBInteraction000407599
      WBInteraction000407600
      WBInteraction000407601
      WBInteraction000407602
      WBInteraction000407603
      WBInteraction000407604
      WBInteraction000407605
      WBInteraction000422215
      WBInteraction000423163
      WBInteraction000426318
      WBInteraction000442916
      WBInteraction000467543
      WBInteraction000470104
      WBInteraction000472088
      WBInteraction000472507
      WBInteraction000473235
      WBInteraction000473369
      WBInteraction000565396
      WBInteraction000571779
  Map_info: Map: III Position: -27.1067 Error: 0.021373
    Positive: Positive_clone: F54C4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005411
    WBPaper00017762
    WBPaper00026643
    WBPaper00038491
    WBPaper00050162
    WBPaper00055090
    WBPaper00059520
    WBPaper00065308
  Remark: Sequence connection from [Blackwell K]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene