WormBase Tree Display for Gene: WBGene00018172

WBGene00018172 SMap: S_parent: Sequence: F38B6
  Identity: Version: 2
    Name: Sequence_name: F38B6.2
      Molecular_name: F38B6.2
        F38B6.2.1
        CE45999
      Other_name: CELE_F38B6.2 Accession_evidence: NDB BX284606
      Public_name: F38B6.2
    DB_info: Database: AceView gene XH315
        WormQTL gene WBGene00018172
        WormFlux gene WBGene00018172
        NDB locus_tag CELE_F38B6.2
        NCBI gene 185452
        RefSeq protein NM_076725.5
        TREEFAM TREEFAM_ID TF322014
        TrEMBL UniProtAcc F5GU48
        UniProt_GCRP UniProtAcc F5GU48
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Apr 2011 14:16:11 WBPerson1849 Event: Acquires_merge: WBGene00018171
      Acquires_merge: WBGene00018171
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01498964
      WBVar01155999
      WBVar01156000
      WBVar01156001
      WBVar01156002
      WBVar01156003
      WBVar00506723
      WBVar00506724
      WBVar00506725
      WBVar01498461
      WBVar00506726
      WBVar00506727
      WBVar00506728
      WBVar00506729
      WBVar00506730
      WBVar01550437
      WBVar01498681
      WBVar01496110
      WBVar01526619
      WBVar02150439
      WBVar00034396
      WBVar00034401
      WBVar01815790
      WBVar01881782
      WBVar01881783
      WBVar01881784
      WBVar01881785
      WBVar01881786
      WBVar01155990
      WBVar01155991
      WBVar01155992
      WBVar01155993
      WBVar01155994
      WBVar01155995
      WBVar02150476
      WBVar01155996
      WBVar01155997
      WBVar01500067
      WBVar01155998
    RNASeq_FPKM (74)
    Ortholog (22)
    Paralog: WBGene00018176 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
    Structured_description: Automated_description: Enriched in cholinergic neurons; mechanosensory neurons; pharyngeal-intestinal valve; and pharynx based on microarray and single-cell RNA-seq studies. Is affected by several genes including daf-16; skn-1; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including Zidovudine; Rifampin; and Psoralens based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F38B6.2
    Corresponding_CDS_history: F38B6.2:wp225
    Corresponding_transcript: F38B6.2.1
    Other_sequence: Tcol_isotig22934
    Associated_feature: WBsf648251
      WBsf1005618
  Experimental_info: RNAi_result: WBRNAi00014540 Inferred_automatically: RNAi_primary
      WBRNAi00031948 Inferred_automatically: RNAi_primary
      WBRNAi00046686 Inferred_automatically: RNAi_primary
      WBRNAi00046685 Inferred_automatically: RNAi_primary
      WBRNAi00031949 Inferred_automatically: RNAi_primary
      WBRNAi00014541 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026391
      Expr1037826
      Expr1150564
      Expr2003467
      Expr2021682
    Microarray_results (31)
    Expression_cluster: WBPaper00024505:pharyngeal_enriched
      WBPaper00032976:dosage_compensated_genes
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00040420:ALM_PLM_enriched
      WBPaper00040420:FLP_enriched
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045774:clk-1_downregulated
      WBPaper00046012:tdp-1(ok803)_downregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster5
      WBPaper00053402:cco-1(RNAi)_downregulated
      WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00055941:nuo-6(qm200)_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056169:rrf-3(pk1426)_downregulated_L3
      WBPaper00056169:rrf-3(pk1426)_downregulated_L4
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056290:mdt-15(mg584)_upregulated
      WBPaper00056330:glycine_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057068:ints-4(RNAi)_downregulated
      WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058678:DAF-12_upregulated_PVD
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059231:alh-6(lax105)_L4_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059739:hira-1(gk835598)_downregulated_L4
      WBPaper00059763:neuron_expressed
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060909:atfs-1(et18)_downregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061274:hypergravity_10xg_downregulated
      WBPaper00061340:g1A
      WBPaper00061340:mc3
      WBPaper00061340:Pharyngeal_intestinal_valve
      WBPaper00061340:pm7
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:C38C6.3-acdh-6
      WBPaper00061527:C54G4.4-Y45F3A.8
      WBPaper00061651:DA9_enriched
      WBPaper00061651:DA_enriched
      WBPaper00061651:DB01_enriched
      WBPaper00061651:DB_enriched
      WBPaper00061651:I1_enriched
      WBPaper00061651:VA12_enriched
      WBPaper00061651:VA_enriched
      WBPaper00061651:VB01_enriched
      WBPaper00061651:VB02_enriched
      WBPaper00061651:VB_enriched
      WBPaper00062156:jmjd-1.2(zr1010)_upregulated
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065005:sams-3(RNAi)_upregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065841:53_0
      WBPaper00065841:55_0
      WBPaper00065841:126_0
      WBPaper00065841:137_0
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_5
      cgc4489_group_25
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_N2
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_E
      WBPaper00032948:FedUp
      WBPaper00034661:AgNPs_downregulated
      WBPaper00034739:N2lessDR1350
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_G
      WBPaper00038172:crh-1null_down_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00040116:pRJ-FR.5_down_regulated
      WBPaper00041267:SpaceFlight_Downregulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00045673:colistin_upregulated
      WBPaper00046083:oga-1(ok1207)_OP50_downregulated
      WBPaper00046083:ogt-1(ok1474)_OP50_downregulated
      WBPaper00046083:pmk-1(km25)_OP50_downregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00047070:N2_UV_downregulated
      WBPaper00047070:xpa-1_UV_downregulated
      WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
    Interaction (54)
  Map_info: Positive: Positive_clone: F38B6 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -2.55911
  Method: Gene