WormBase Tree Display for Gene: WBGene00009608

WBGene00009608 SMap: S_parent: Sequence: F41D3
  Identity: Version: 2
    Name: CGC_name: nhr-265 Person_evidence: WBPerson600
      Sequence_name: F41D3.3
      Molecular_name: F41D3.3
        F41D3.3.1
        CE16022
      Other_name: CELE_F41D3.3 Accession_evidence: NDB BX284601
      Public_name: nhr-265
    DB_info: Database: AceView gene 1M841
        WormQTL gene WBGene00009608
        WormFlux gene WBGene00009608
        NDB locus_tag CELE_F41D3.3
        Panther gene CAEEL|WormBase=WBGene00009608|UniProtKB=O45507
          family PTHR46397
        NCBI gene 185603
        RefSeq protein NM_060691.2
        TREEFAM TREEFAM_ID TF321941
        TrEMBL UniProtAcc O45507
        UniProt_GCRP UniProtAcc O45507
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Jul 2005 10:29:12 WBPerson2970 Name_change: CGC_name: nhr-265
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele: WBVar00677706
      WBVar00677707
      WBVar00677708
      WBVar00677709
      WBVar00677710
      WBVar00677711
      WBVar00677712
      WBVar00677713
      WBVar00677714
      WBVar00677715
      WBVar00677716
      WBVar02123567
      WBVar01287042
      WBVar01287044
      WBVar01499739
      WBVar01433632
      WBVar01433633
      WBVar01664068
      WBVar01664069
      WBVar01664070
      WBVar01499204
      WBVar00267409
      WBVar00347759
      WBVar00347760
      WBVar00347761
      WBVar00347762
      WBVar00347763
      WBVar00347764
      WBVar00347765
      WBVar02124530
      WBVar02122512
      WBVar01499055
      WBVar01403749
      WBVar01499999
      WBVar02148173
      WBVar01500019
      WBVar01500020
      WBVar00158783
      WBVar00158784
      WBVar02002127
      WBVar02128683
      WBVar00250045
      WBVar02151044
      WBVar01498959
      WBVar00677705
    RNASeq_FPKM (74)
    GO_annotation: 00034659
      00034660
      00034661
      00034662
      00117245
      00117246
      00117247
      00117248
    Ortholog (19)
    Paralog (225)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F41D3.3
    Corresponding_transcript: F41D3.3.1
    Transcription_factor: WBTranscriptionFactor000531
  Experimental_info: RNAi_result (4)
    Expr_pattern: Expr1013200
      Expr1150838
      Expr2014156
      Expr2032400
    Drives_construct: WBCnstr00032061
    Construct_product: WBCnstr00032061
    Microarray_results (17)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044736:oscillating_dev_expression
      WBPaper00044760:somatic_specific
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_upregulated
      WBPaper00045918:96h_infection_recovery_downregulated
      WBPaper00045974:NSM_enriched_totalRNA_tiling
      WBPaper00048611:MnCl2_upregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_met-2(ok2307)
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050801:SET-4_dauer_regulome
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00053402:his-3(RNAi)_upregulated
      WBPaper00054410:set-26(tm2467)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055013:hmg-4(RNAi)_upregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056169:rrf-3(pk1426)_downregulated_L2
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059426:Ag-nanoparticles_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060445:ikb-1(nr2027)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_downregulated_L4
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061390:N2_ascarosides_downregulated
      WBPaper00061527:C54G4.4-Y45F3A.8
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065288:mdt-15(tm2182)_upregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00027111:rrf-1(pk1417)_downregulated
      WBPaper00031184:acrylamide_upregulated
      WBPaper00034739:N2lessDR1350
      WBPaper00035560:ahr-1_downregulated
      WBPaper00045294:0.1uM_TBBP_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00055899:nitroguanidine_regulated
    Interaction (33)
  Map_info: Map: I Position: 13.0994 Error: 0.003721
    Positive: Positive_clone: F41D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5408
    Pseudo_map_position
  Reference: WBPaper00027309
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene