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WormBase Tree Display for Gene: WBGene00009233

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Name Class

WBGene00009233SMapS_parentSequenceF28H6
IdentityVersion1
NameSequence_nameF28H6.4
Molecular_nameF28H6.4
F28H6.4.1
CE23688
Other_nameCELE_F28H6.4Accession_evidenceNDBBX284606
Public_nameF28H6.4
DB_infoDatabaseAceViewgeneXO751
WormQTLgeneWBGene00009233
WormFluxgeneWBGene00009233
NDBlocus_tagCELE_F28H6.4
PanthergeneCAEEL|WormBase=WBGene00009233|UniProtKB=Q9U3H5
familyPTHR23362
NCBIgene181522
RefSeqproteinNM_077953.6
TREEFAMTREEFAM_IDTF322681
TrEMBLUniProtAccQ9U3H5
UniProt_GCRPUniProtAccQ9U3H5
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar01499887
WBVar01499519
WBVar01499888
WBVar01493816
WBVar01499710
WBVar01782611
WBVar02027620
WBVar01552595
WBVar00084593
WBVar01552596
WBVar00084594
WBVar01552597
WBVar00084595
WBVar01552598
WBVar01552599
WBVar01552600
WBVar01552601
WBVar01552602
WBVar01552603
WBVar01552604
WBVar01832131
WBVar02072678
WBVar01760125
WBVar01760126
WBVar01760127
WBVar01760128
WBVar01941918
WBVar01946265
WBVar01946266
WBVar01946267
WBVar01679390
WBVar00217953
WBVar00217954
WBVar02015633
WBVar01527859
WBVar01787887
WBVar01206231
WBVar01206232
WBVar01472352
WBVar01206233
WBVar01472353
WBVar01206234
WBVar01472354
WBVar01206235
WBVar01206236
WBVar01472355
WBVar01206237
WBVar01206238
WBVar01206239
WBVar01206240
WBVar01206241
WBVar01206242
WBVar00523533
WBVar01206243
WBVar00523534
WBVar00523535
WBVar01206244
WBVar01206245
WBVar00523536
WBVar01206246
WBVar02049215
WBVar00523537
WBVar01206247
WBVar00523538
WBVar01206248
WBVar01206249
WBVar01206250
WBVar01206251
WBVar01206252
WBVar01206253
WBVar01206254
WBVar01206255
WBVar01704000
WBVar01206256
WBVar01206257
WBVar01206258
WBVar01206259
WBVar01622075
WBVar01206260
WBVar01206261
WBVar01206262
WBVar01206263
WBVar01206264
WBVar01206265
WBVar01206267
WBVar01206268
WBVar01206269
WBVar01206270
WBVar01206271
WBVar01206272
WBVar01488065
WBVar01955183
WBVar01835793
WBVar01498960
WBVar01500067
RNASeq_FPKM (74)
Ortholog (29)
Paralog (37)
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABalppppppp; OLL; RIM; germ line; and interneuron based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; tiling array; and proteomic studies. Is affected by eight chemicals including D-glucose; stavudine; and paraquat based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Homeobox-like domain superfamily; Phosphorylation site; SPK domain; and Domain of unknown function (DUF545).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF28H6.4
Corresponding_transcriptF28H6.4.1
Associated_featureWBsf1007832
WBsf1024358
WBsf236644
WBsf236645
Experimental_infoRNAi_result (5)
Expr_patternExpr1026992
Expr1034030
Expr1149777
Expr2003121
Expr2021335
Drives_constructWBCnstr00032354
Construct_productWBCnstr00032354
Microarray_results (21)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032976:non_compensated_genes
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037946:MAB-5_interacting
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040560:hpl-2_embryo_upregulated
WBPaper00041688:mes-2_mes-4_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Oogenic
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048988:neuron_expressed
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050094:mes-6(bn66)_upregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:NMDA-neuron_enriched
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:mes-4(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056039:ptl-1(ok621)_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056218:daf-16(mu86)_upregulated_Day7
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00059598:HeatShock_upregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061274:microgravity_upregulated
WBPaper00061340:B
WBPaper00061340:Neuroblast_AIZ_FLP_RMG
WBPaper00061340:Neuroblast_ASJ_AUA
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061527:R07E4.5-skp-1_1608
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064716:paraquat_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066085:sin-3(syb2172)_upregulated
WBPaper00066110:Doxorubicin_downregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_downregulated
cgc4386_cluster_5_1
cgc4489_group_2
cgc4489_group_7
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00028483:Up_mes-4_vs_WT
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00031252:AIN-1_IP_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_1
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035227:heat_shock_regulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-8_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Atrazine_regulated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_F
WBPaper00037611:GLD-2-associated
WBPaper00037611:RNP-8-associated
WBPaper00037695:WC_5-day
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00040985:AIN-2_asynchronous_muscle
WBPaper00041002:HF_3d_0.2mM_Down
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00042258:DA1877_downregulated_GravidAdult
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_N2
WBPaper00055899:nitroguanidine_regulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(83_min)
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
Interaction (11)
Map_infoPositivePositive_cloneF28H6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionX16.5096
MethodGene