WormBase Tree Display for CDS: ZC434.5
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| ZC434.5 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZC434 | |||
| Structure | Source_exons | 1 | 140 | |||
| 202 | 1566 | |||||
| 2134 | 2227 | |||||
| 2431 | 2778 | |||||
| 2846 | 4228 | |||||
| 4280 | 4399 | |||||
| DB_info | Database | KEGG | KEGG_id | 6.1.1.17 | ||
| TrEMBL | UniProtAcc | Q23315 | ||||
| UniProt | UniProtAcc | Q23315 | ||||
| UniProt_GCRP | UniProtAcc | Q23315 | ||||
| AlphaFold | entry | Q23315 | ||||
| NCBI_protein | GI_number | GI:3925372 | ||||
| TREEFAM | TREEFAM_ID | TF300380 | ||||
| Protein_id | CHROMOSOME_I | CAB00060 | 1 | |||
| DB_remark | EARS-1 protein; contains similarity to Pfam domains PF00458 (WHEP-TRS domain), PF00749 (tRNA synthetases class I (E and Q), catalytic domain), PF03950 (tRNA synthetases class I (E and Q), anti-codon binding domain), PF20974 (tRNA synthetases class I (E and Q), anti-codon binding domain); contains similarity to Interpro domains IPR020056 (Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal), IPR000738 (WHEP-TRS domain), IPR049437 (tRNA synthetases class I (E and Q), anti-codon binding domain), IPR009068 (uS15/NS1, RNA-binding domain superfamily), IPR011035 (Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily), IPR000924 (Glutamyl/glutaminyl-tRNA synthetase), IPR020059 (Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain), IPR020058 (Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain), IPR014729 (Rossmann-like alpha/beta/alpha sandwich fold), IPR004526 (Glutamyl-tRNA synthetase, archaeal/eukaryotic cytosolic) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00001337 | ||||
| Corresponding_transcript | ZC434.5.1 | |||||
| ZC434.5.2 | ||||||
| Corresponding_protein | CE06580 | |||||
| Corresponding_PCR_product | cenix:18-h11 | |||||
| mv_ZC434.5 | ||||||
| sjj2_ZC434.5 | ||||||
| sjj_ZC434.5 | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA (109) | ||||||
| RNAi_result | WBRNAi00095824 | |||||
| WBRNAi00038058 | ||||||
| WBRNAi00096891 | ||||||
| WBRNAi00116685 | ||||||
| WBRNAi00058913 | ||||||
| WBRNAi00096952 | ||||||
| Microarray_results (21) | ||||||
| Brief_identification | glutamate--tRNA ligase | Accession_evidence | UniProt | TR:Q23315 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf012431 | |||||
| Method | curated |
