WormBase Tree Display for CDS: Y42G9A.3a
expand all nodes | collapse all nodes | view schema
| Y42G9A.3a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y42G9A | |||
| Structure | Source_exons | 1 | 83 | |||
| 348 | 590 | |||||
| 643 | 843 | |||||
| 895 | 1251 | |||||
| 1410 | 1653 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q9N4Z5 | ||
| UniProt | UniProtAcc | Q9N4Z5 | ||||
| UniProt_GCRP | UniProtAcc | Q9N4Z5 | ||||
| AlphaFold | entry | Q9N4Z5 | ||||
| NCBI_protein | GI_number | GI:351063109 | ||||
| TREEFAM | TREEFAM_ID | TF351911 | ||||
| Protein_id | CHROMOSOME_III | CCD71152 | 1 | |||
| DB_remark | contains similarity to Pfam domains PF00560 (Leucine Rich Repeat), PF13855 (Leucine rich repeat); contains similarity to Interpro domains IPR001611 (Leucine-rich repeat), IPR003591 (Leucine-rich repeat, typical subtype), IPR032675 (Leucine-rich repeat domain superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | AU211234 | |||
| Visible | Gene | WBGene00021533 | ||||
| Corresponding_transcript | Y42G9A.3a.1 | |||||
| Corresponding_protein | CE21870 | |||||
| Corresponding_PCR_product | TH:332D10 | |||||
| TH:337B1 | ||||||
| cenix:177-e9 | ||||||
| cenix:332-d10 | ||||||
| cenix:337-b1 | ||||||
| mv_Y42G9A.3 | ||||||
| sjj_Y42G9A.d | ||||||
| Corresponding_oligo_set (23) | ||||||
| Matching_cDNA (47) | ||||||
| RNAi_result | WBRNAi00006876 | |||||
| WBRNAi00073363 | ||||||
| WBRNAi00056437 | ||||||
| WBRNAi00056435 | ||||||
| WBRNAi00000316 | ||||||
| WBRNAi00007076 | ||||||
| WBRNAi00056436 | ||||||
| WBRNAi00020515 | ||||||
| WBRNAi00037022 | ||||||
| Microarray_results (24) | ||||||
| Brief_identification | Leucine-rich repeat-containing protein 58 | Accession_evidence | UniProt | TR:Q9N4Z5 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
