WormBase Tree Display for CDS: T21E3.1
expand all nodes | collapse all nodes | view schema
| T21E3.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T21E3 | |||
| Structure | Source_exons | 1 | 263 | |||
| 312 | 1189 | |||||
| 1238 | 1977 | |||||
| 2048 | 2337 | |||||
| 2414 | 2504 | |||||
| DB_info | Database | SwissProt | UniProtAcc | O01767 | ||
| UniProt | UniProtAcc | O01767 | ||||
| UniProt_GCRP | UniProtAcc | O01767 | ||||
| AlphaFold | entry | O01767 | ||||
| NCBI_protein | GI_number | GI:351063243 | ||||
| TREEFAM | TREEFAM_ID | TF316265 | ||||
| Protein_id | CHROMOSOME_I | CCD71367 | 1 | |||
| DB_remark | EGG-4 protein; contains similarity to Pfam domain PF00102 (Protein-tyrosine phosphatase); contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR029021 (Protein-tyrosine phosphatase-like), IPR000242 (Tyrosine-specific protein phosphatase, PTPase domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00020652 | ||||
| Corresponding_transcript | T21E3.1.1 | |||||
| Corresponding_protein | CE13874 | |||||
| Corresponding_PCR_product | TH:212-a9 | |||||
| cenix:199-e5 | ||||||
| cenix:212-a9 | ||||||
| mv_R12E2.10_1 | ||||||
| mv_T21E3.1 | ||||||
| sjj_R12E2.10_1 | ||||||
| sjj_T21E3.1 | ||||||
| smd_T21E3.1:2 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA (38) | ||||||
| RNAi_result (13) | ||||||
| Microarray_results (21) | ||||||
| Brief_identification | Inactive protein-tyrosine phosphatase egg-4 | Accession_evidence | UniProt | SP:O01767 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf015616 | |||||
| WBsf021547 | ||||||
| Method | curated |
