WormBase Tree Display for CDS: T05D4.5
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| T05D4.5 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T05D4 | |||
| Structure | Source_exons | 1 | 384 | |||
| 652 | 819 | |||||
| 903 | 986 | |||||
| 1435 | 1506 | |||||
| 1556 | 1762 | |||||
| 2175 | 2708 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O45751 | ||
| UniProt | UniProtAcc | O45751 | ||||
| UniProt_GCRP | UniProtAcc | O45751 | ||||
| AlphaFold | entry | O45751 | ||||
| NCBI_protein | GI_number | GI:3879443 | ||||
| TREEFAM | TREEFAM_ID | TF322882 | ||||
| Protein_id | CHROMOSOME_III | CAB03295 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF00635 (MSP (Major sperm protein) domain); contains similarity to Interpro domains IPR000535 (Major sperm protein (MSP) domain), IPR008962 (PapD-like superfamily), IPR013783 (Immunoglobulin-like fold) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00011478 | ||||
| Corresponding_transcript | T05D4.5.1 | |||||
| Corresponding_protein | CE16345 | |||||
| Corresponding_PCR_product | TH:323B3 | |||||
| cenix:323-b3 | ||||||
| mv_T05D4.5 | ||||||
| sjj_T05D4.5 | ||||||
| Corresponding_oligo_set (13) | ||||||
| Matching_cDNA | male_Nanopore_Roach_127396 | |||||
| young_adult_Nanopore_Roach_106563 | ||||||
| male_Nanopore_Roach_37666 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG6849|c1_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| FN891640 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG6849|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| FN891638 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00006191 | |||||
| WBRNAi00018229 | ||||||
| WBRNAi00001937 | ||||||
| WBRNAi00035200 | ||||||
| WBRNAi00022576 | ||||||
| WBRNAi00052508 | ||||||
| Microarray_results (14) | ||||||
| Brief_identification | Major sperm protein | Accession_evidence | UniProt | TR:O45751 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
