WormBase Tree Display for CDS: T05C12.6a
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T05C12.6a | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | T05C12 | |||
Structure | Source_exons | 1 | 39 | |||
106 | 254 | |||||
309 | 462 | |||||
504 | 579 | |||||
632 | 1109 | |||||
1152 | 1274 | |||||
1321 | 1646 | |||||
1695 | 2219 | |||||
2383 | 2531 | |||||
DB_info | Database | SwissProt | UniProtAcc | Q22227 | ||
UniProtIsoformAcc | Q22227-1 | |||||
UniProt | UniProtAcc | Q22227 | ||||
UniProt_GCRP | UniProtAcc | Q22227 | ||||
AlphaFold | entry | Q22227 | ||||
NCBI_protein | GI_number | GI:3879448 | ||||
TREEFAM | TREEFAM_ID | TF318198 | ||||
Protein_id | CHROMOSOME_II | CAA91307 | 1 | |||
DB_remark | MIG-5 protein; contains similarity to Pfam domains PF00595 (PDZ domain), PF00610 (Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)), PF00778 (DIX domain); contains similarity to Interpro domains IPR038207 (DIX domain superfamily), IPR029071 (Ubiquitin-like domain superfamily), IPR001158 (DIX domain), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR015506 (Dishevelled-related protein), IPR036390 (Winged helix DNA-binding domain superfamily), IPR036388 (Winged helix-like DNA-binding domain superfamily), IPR000591 (DEP domain) | |||||
Origin (2) | ||||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Accession_evidence | NDB | AV201065 | |||
Inferred_automatically | transcript_builder | |||||
Visible | Gene | WBGene00003241 | ||||
Corresponding_transcript | T05C12.6a.1 | |||||
Corresponding_protein | CE02318 | |||||
Corresponding_PCR_product | cenix:202-e3 | |||||
cenix:202-f3 | ||||||
mv_AAC16434 | ||||||
mv_T05C12.6a | ||||||
sjj_T05C12.6 | ||||||
Corresponding_oligo_set (16) | ||||||
Matching_cDNA (91) | ||||||
RNAi_result (61) | ||||||
Microarray_results (22) | ||||||
Brief_identification | Segment polarity protein dishevelled homolog mig-5 | Accession_evidence | UniProt | SP:Q22227 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |