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WormBase Tree Display for CDS: SRAE_2000486500

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Name Class

SRAE_2000486500SMapS_parentSequenceSRAE_chr2
StructureSource_exons1585
827916
10811184
12302053
25712942
33623520
40224116
48216797
DB_infoDatabaseUniProtUniProtAccA0A090LRP2
UniProtIdA0A090LRP2_STRRB
DB_remarkcontains similarity to Pfam domains PF00387 (Phosphatidylinositol-specific phospholipase C, Y domain), PF00388 (Phosphatidylinositol-specific phospholipase C, X domain), PF06631 (Protein of unknown function (DUF1154)), PF09279 (Phosphoinositide-specific phospholipase C, efhand-like), PF17787 (PH domain); contains similarity to Interpro domains IPR015359 (Phosphoinositide-specific phospholipase C, EF-hand-like domain), IPR037862 (PLC-beta, PH domain), IPR000909 (Phosphatidylinositol-specific phospholipase C, X domain), IPR001711 (Phospholipase C, phosphatidylinositol-specific, Y domain), IPR011992 (EF-hand domain pair), IPR001192 (Phosphoinositide phospholipase C family), IPR042531 (Phospholipase C-beta, C-terminal domain superfamily), IPR016280 (Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase beta), IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily), IPR009535 (Phospholipase C-beta, conserved site), IPR035892 (C2 domain superfamily), IPR000008 (C2 domain)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusPartially_confirmed
VisibleGeneWBGene00265111
Corresponding_transcriptSRAE_2000486500.1
Corresponding_proteinSRP07763
Matching_cDNABI142570Inferred_automaticallytranscript_builder.pl
Brief_identification1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase
RNASeq_FPKMWBls:000067715.2734From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
15.3204From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
15.3852From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
15.5503From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
16.0157From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
16.272From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
WBls:000067815.0049From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
18.5534From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
18.7065From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
19.3425From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
19.4694From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
21.4054From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
21.4952From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
9.06818From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
WBls:000068031.2636From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006820.129132From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated