WormBase Tree Display for CDS: SRAE_2000486500
expand all nodes | collapse all nodes | view schema
SRAE_2000486500 | SMap | S_parent | Sequence | SRAE_chr2 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 585 | |||
827 | 916 | |||||
1081 | 1184 | |||||
1230 | 2053 | |||||
2571 | 2942 | |||||
3362 | 3520 | |||||
4022 | 4116 | |||||
4821 | 6797 | |||||
DB_info | Database | UniProt | UniProtAcc | A0A090LRP2 | ||
UniProtId | A0A090LRP2_STRRB | |||||
DB_remark | contains similarity to Pfam domains PF00387 (Phosphatidylinositol-specific phospholipase C, Y domain), PF00388 (Phosphatidylinositol-specific phospholipase C, X domain), PF06631 (Protein of unknown function (DUF1154)), PF09279 (Phosphoinositide-specific phospholipase C, efhand-like), PF17787 (PH domain); contains similarity to Interpro domains IPR015359 (Phosphoinositide-specific phospholipase C, EF-hand-like domain), IPR037862 (PLC-beta, PH domain), IPR000909 (Phosphatidylinositol-specific phospholipase C, X domain), IPR001711 (Phospholipase C, phosphatidylinositol-specific, Y domain), IPR011992 (EF-hand domain pair), IPR001192 (Phosphoinositide phospholipase C family), IPR042531 (Phospholipase C-beta, C-terminal domain superfamily), IPR016280 (Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase beta), IPR017946 (PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily), IPR009535 (Phospholipase C-beta, conserved site), IPR035892 (C2 domain superfamily), IPR000008 (C2 domain) | |||||
Origin | From_laboratory | MBM | ||||
Species | Strongyloides ratti | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | wormbase | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00265111 | ||||
Corresponding_transcript | SRAE_2000486500.1 | |||||
Corresponding_protein | SRP07763 | |||||
Matching_cDNA | BI142570 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase | |||||
RNASeq_FPKM | WBls:0000677 | 15.2734 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502 | ||
15.3204 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496 | ||||
15.3852 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503 | ||||
15.5503 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498 | ||||
16.0157 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497 | ||||
16.272 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504 | ||||
WBls:0000678 | 15.0049 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575 | |||
18.5534 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500 | ||||
18.7065 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494 | ||||
19.3425 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499 | ||||
19.4694 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493 | ||||
21.4054 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501 | ||||
21.4952 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495 | ||||
9.06818 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576 | ||||
WBls:0000680 | 31.2636 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444 | |||
WBls:0000682 | 0.129132 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443 | |||
Method | curated |