WormBase Tree Display for CDS: SRAE_2000321800
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SRAE_2000321800 | SMap | S_parent | Sequence | SRAE_chr2 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 588 | |||
640 | 1662 | |||||
DB_info | Database | UniProt | UniProtAcc | A0A090LFM0 | ||
UniProtId | A0A090LFM0_STRRB | |||||
DB_remark | contains similarity to Pfam domain PF00118 (TCP-1/cpn60 chaperonin family); contains similarity to Interpro domains IPR027410 (TCP-1-like chaperonin intermediate domain superfamily), IPR012722 (T-complex protein 1, zeta subunit), IPR027413 (GroEL-like equatorial domain superfamily), IPR017998 (Chaperone tailless complex polypeptide 1 (TCP-1)), IPR027409 (GroEL-like apical domain superfamily), IPR002423 (Chaperonin Cpn60/GroEL/TCP-1 family) | |||||
Origin | From_laboratory | MBM | ||||
Species | Strongyloides ratti | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | wormbase | |||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00263439 | ||||
Corresponding_transcript | SRAE_2000321800.1 | |||||
SRAE_2000321800.2 | ||||||
Corresponding_protein | SRP04380 | |||||
Matching_cDNA (19) | ||||||
Brief_identification | T-complex protein 1 subunit zeta-2 | |||||
RNASeq_FPKM | WBls:0000678 | 252.94 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576 | ||
WBls:0000680 | 131.536 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444 | |||
WBls:0000682 | 37.0502 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443 | |||
Method | curated |