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WormBase Tree Display for CDS: SRAE_2000214100

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Name Class

SRAE_2000214100SMapS_parentSequenceSRAE_chr2
StructureSource_exons1879
DB_infoDatabaseUniProtUniProtAccA0A090MYN2
UniProtIdA0A090MYN2_STRRB
DB_remarkcontains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat)
OriginFrom_laboratoryMBM
SpeciesStrongyloides ratti
PropertiesCodingCDS
CDS_predicted_bywormbase
Prediction_statusConfirmed
VisibleGeneWBGene00262350
Corresponding_transcriptSRAE_2000214100.1
Corresponding_proteinSRP09045
Matching_cDNAFC817615Inferred_automaticallytranscript_builder.pl
FC817757Inferred_automaticallytranscript_builder.pl
FC816900Inferred_automaticallytranscript_builder.pl
FC811379Inferred_automaticallytranscript_builder.pl
BI397173Inferred_automaticallytranscript_builder.pl
FC812013Inferred_automaticallytranscript_builder.pl
BI323109Inferred_automaticallytranscript_builder.pl
BI502151Inferred_automaticallytranscript_builder.pl
Brief_identificationNematode cuticle collagen, N-terminal domain and Collagen triple helix repeat-containing protein
RNASeq_FPKMWBls:0000677130.244From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498
131.483From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504
209.434From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502
211.644From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496
93.405From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503
95.2244From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497
WBls:00006781.42539From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495
1.94384From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499
2.19384From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493
2.28905From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501
2.41106From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494
2.59215From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500
4.55219From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576
6.95864From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575
WBls:00006802.23695From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444
WBls:00006821679.61From_analysisRNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443
Methodcurated