WormBase Tree Display for CDS: R155.3
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| R155.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | R155 | |||
| Structure | Source_exons | 1 | 1985 | |||
| 2033 | 2268 | |||||
| 2737 | 2953 | |||||
| 3002 | 3385 | |||||
| 3435 | 3604 | |||||
| 3730 | 3884 | |||||
| 3933 | 4283 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O01923 | ||
| UniProt | UniProtAcc | O01923 | ||||
| UniProt_GCRP | UniProtAcc | O01923 | ||||
| AlphaFold | entry | O01923 | ||||
| NCBI_protein | GI_number | GI:351063488 | ||||
| Protein_id | CHROMOSOME_III | CCD71670 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF00102 (Protein-tyrosine phosphatase); contains similarity to Interpro domains IPR003595 (Protein-tyrosine phosphatase, catalytic), IPR029021 (Protein-tyrosine phosphatase-like), IPR000242 (Tyrosine-specific protein phosphatase, PTPase domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00020117 | ||||
| Corresponding_transcript | R155.3.1 | |||||
| Corresponding_protein | CE12866 | |||||
| Corresponding_PCR_product | TH:327F8 | |||||
| cenix:327-f8 | ||||||
| mv_R155.3 | ||||||
| sjj_R155.3 | ||||||
| Corresponding_oligo_set (13) | ||||||
| Matching_cDNA | male_Nanopore_Roach_89992 | |||||
| male_Nanopore_Roach_98105 | ||||||
| male_Nanopore_Roach_123790 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_263150 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG2341|c8_g1_i2 | Inferred_automatically | transcript_builder.pl | ||||
| FM247315 | Inferred_automatically | transcript_builder.pl | ||||
| FM248587 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG2341|c8_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00051988 | |||||
| WBRNAi00017875 | ||||||
| WBRNAi00006558 | ||||||
| Microarray_results (14) | ||||||
| Brief_identification | Tyrosine-protein phosphatase domain-containing protein | Accession_evidence | UniProt | TR:O01923 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
