WormBase Tree Display for CDS: PPA41642
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PPA41642 | SMap | S_parent | Sequence | PPA_ChrIV | ||
---|---|---|---|---|---|---|
Structure | Source_exons (28) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S2840-82.41 | ||
DB_remark | contains similarity to Pfam domains PF00201 (UDP-glucoronosyl and UDP-glucosyl transferase), PF10317 (Serpentine type 7TM GPCR chemoreceptor Srd), PF10327 (Serpentine type 7TM GPCR chemoreceptor Sri); contains similarity to Interpro domains IPR019429 (7TM GPCR, serpentine chemoreceptor class i (Sri)), IPR002213 (UDP-glucuronosyl/UDP-glucosyltransferase), IPR019421 (7TM GPCR, serpentine receptor class d (Srd)) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00280011 | ||||
Corresponding_transcript | PPA41642.1 | |||||
Corresponding_protein | PP58055 | |||||
Corresponding_oligo_set | GPL14372_Probes_22006 | |||||
GPL14372_Probes_89682 | ||||||
GPL14372_Probes_89683 | ||||||
GPL14372_Probes_89685 | ||||||
Microarray_results | GPL14372_Probes_22006 | |||||
GPL14372_Probes_89682 | ||||||
GPL14372_Probes_89683 | ||||||
GPL14372_Probes_89685 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Method | curated |