WormBase Tree Display for CDS: PPA38497
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PPA38497 | SMap | S_parent | Sequence | PPA_ChrI | |
---|---|---|---|---|---|
Structure | Source_exons (18) | ||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S207-9.30 | |
DB_remark | contains similarity to Pfam domains PF00288 (GHMP kinases N terminal domain), PF08544 (GHMP kinases C terminal), PF10509 (Galactokinase galactose-binding signature); contains similarity to Interpro domains IPR019539 (Galactokinase, N-terminal domain), IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR036554 (GHMP kinase, C-terminal domain superfamily), IPR014721 (Small ribosomal subunit protein uS5 domain 2-type fold, subgroup), IPR013750 (GHMP kinase, C-terminal domain), IPR000705 (Galactokinase), IPR006204 (GHMP kinase N-terminal domain) | ||||
Origin | From_laboratory | RS | |||
Species | Pristionchus pacificus | ||||
Properties | Coding | CDS | |||
CDS_predicted_by | pristionchus.org | ||||
Prediction_status | Predicted | ||||
Visible | Gene | WBGene00276866 | |||
Corresponding_transcript | PPA38497.1 | ||||
Corresponding_protein | PP63686 | ||||
Corresponding_oligo_set | GPL14372_Probes_77327 | ||||
GPL14372_Probes_77328 | |||||
GPL14372_Probes_77329 | |||||
Microarray_results | GPL14372_Probes_77327 | ||||
GPL14372_Probes_77328 | |||||
GPL14372_Probes_77329 | |||||
RNASeq_FPKM (2) | |||||
Method | curated |