WormBase Tree Display for CDS: PPA24999
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PPA24999 | SMap | S_parent | Sequence | PPA_ChrI | |
---|---|---|---|---|---|
Structure | Source_exons (17) | ||||
DB_info | Database | pristionchus.org | cds | gene-UMA-S196-21.18 | |
TREEFAM | TREEFAM_ID | TF105897 | |||
DB_remark | contains similarity to Pfam domains PF04427 (Brix domain), PF14813 (NADH dehydrogenase 1 beta subcomplex subunit 2); contains similarity to Interpro domains IPR007109 (Brix domain), IPR026627 (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, animal type) | ||||
Origin | From_laboratory | RS | |||
Species | Pristionchus pacificus | ||||
Properties | Coding | CDS | |||
CDS_predicted_by | pristionchus.org | ||||
Prediction_status | Partially_confirmed | ||||
Visible | Gene | WBGene00114553 | |||
Corresponding_transcript | PPA24999.1 | ||||
Corresponding_protein | PP61304 | ||||
Corresponding_oligo_set | GPL14372_Probes_51372 | ||||
GPL14372_Probes_51373 | |||||
GPL14372_Probes_51375 | |||||
GPL14372_Probes_51378 | |||||
GPL14372_Probes_51379 | |||||
GPL14372_Probes_51380 | |||||
Matching_cDNA | FG102528 | Inferred_automatically | transcript_builder.pl | ||
FG105468 | Inferred_automatically | transcript_builder.pl | |||
FE936373 | Inferred_automatically | transcript_builder.pl | |||
FG104463 | Inferred_automatically | transcript_builder.pl | |||
FE940648 | Inferred_automatically | transcript_builder.pl | |||
FE936766 | Inferred_automatically | transcript_builder.pl | |||
FG104337 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_51372 | ||||
GPL14372_Probes_51373 | |||||
GPL14372_Probes_51375 | |||||
GPL14372_Probes_51378 | |||||
GPL14372_Probes_51379 | |||||
GPL14372_Probes_51380 | |||||
RNASeq_FPKM (2) | |||||
Remark | [171116 mh6] renamed from gene-UMA-S196-21.18 | Curator_confirmed | WBPerson4055 | ||
Method | curated |