WormBase Tree Display for CDS: PPA20452
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PPA20452 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrIII | |||
Structure | Source_exons (22) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S341-0.39 | ||
DB_remark | contains similarity to Pfam domains PF00757 (Furin-like cysteine rich region), PF01030 (Receptor L domain); contains similarity to Interpro domains IPR006212 (Furin-like repeat), IPR036941 (Receptor L-domain superfamily), IPR009030 (Growth factor receptor cysteine-rich domain superfamily), IPR013783 (Immunoglobulin-like fold), IPR000494 (Receptor L-domain), IPR006211 (Furin-like cysteine-rich domain), IPR036116 (Fibronectin type III superfamily) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00110006 | ||||
Corresponding_transcript | PPA20452.1 | |||||
Corresponding_protein | PP63659 | |||||
Corresponding_oligo_set | GPL14372_Probes_66718 | |||||
GPL14372_Probes_66719 | ||||||
GPL14372_Probes_66720 | ||||||
Microarray_results | GPL14372_Probes_66718 | |||||
GPL14372_Probes_66719 | ||||||
GPL14372_Probes_66720 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 5.93779 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S341-0.39 | Curator_confirmed | WBPerson4055 | |||
Method | curated |