WormBase Tree Display for CDS: PPA17522
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PPA17522 | SMap | S_parent | Sequence | PPA_ChrI | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 186 | |||
285 | 437 | |||||
508 | 631 | |||||
700 | 1067 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S139-16.56 | ||
DB_remark | PPA-MXL-3 protein; contains similarity to Pfam domain PF00010 (Helix-loop-helix DNA-binding domain); contains similarity to Interpro domains IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain), IPR037933 () | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00107076 | ||||
Corresponding_transcript | PPA17522.1 | |||||
Corresponding_protein | PP63811 | |||||
Corresponding_oligo_set | GPL14372_Probes_30738 | |||||
GPL14372_Probes_30739 | ||||||
GPL14372_Probes_30740 | ||||||
Microarray_results | GPL14372_Probes_30738 | |||||
GPL14372_Probes_30739 | ||||||
GPL14372_Probes_30740 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S139-16.56 | Curator_confirmed | WBPerson4055 | |||
Method | curated |