WormBase Tree Display for CDS: PPA10288
expand all nodes | collapse all nodes | view schema
PPA10288 | SMap | S_parent | Sequence | PPA_ChrIII | ||
---|---|---|---|---|---|---|
Structure | Source_exons (17) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S341-5.28 | ||
DB_remark | contains similarity to Pfam domains PF00017 (SH2 domain), PF07714 (Protein tyrosine and serine/threonine kinase); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR036860 (SH2 domain superfamily), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR000980 (SH2 domain), IPR020635 (Tyrosine-protein kinase, catalytic domain) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Predicted | |||||
Visible | Gene | WBGene00099842 | ||||
Corresponding_transcript | PPA10288.1 | |||||
Corresponding_protein | PP52075 | |||||
Corresponding_oligo_set | GPL14372_Probes_17111 | |||||
GPL14372_Probes_17112 | ||||||
GPL14372_Probes_17113 | ||||||
Microarray_results | GPL14372_Probes_17111 | |||||
GPL14372_Probes_17112 | ||||||
GPL14372_Probes_17113 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 8.09044 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S341-5.28 | Curator_confirmed | WBPerson4055 | |||
Method | curated |