WormBase Tree Display for CDS: PPA10057
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PPA10057 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | PPA_ChrII | |||
Structure | Source_exons (15) | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S296-8.50 | ||
TREEFAM | TREEFAM_ID | TF300650 | ||||
DB_remark | PPA-KAT-1 protein; contains similarity to Pfam domains PF00108 (Thiolase, N-terminal domain), PF02803 (Thiolase, C-terminal domain); contains similarity to Interpro domains IPR002155 (Thiolase), IPR020616 (Thiolase, N-terminal), IPR020617 (Thiolase, C-terminal), IPR016039 (Thiolase-like) | |||||
Origin | From_laboratory | HX | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00099611 | ||||
Corresponding_transcript | PPA10057.1 | |||||
Corresponding_protein | PP75571 | |||||
Corresponding_oligo_set | GPL14372_Probes_82511 | |||||
GPL14372_Probes_82512 | ||||||
Matching_cDNA | FG105210 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14372_Probes_82511 | |||||
GPL14372_Probes_82512 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 33.4155 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Last_reviewed | 08 Nov 2019 16:13:21 | WBPerson4055 | ||||
Remark | [171116 mh6] renamed from gene-UMM-S296-8.50 | Curator_confirmed | WBPerson4055 | |||
[191108 mh6] This gene has been split based on the RNASeq data. | Curator_confirmed | WBPerson4055 | ||||
From_analysis | RNASeq | |||||
Method | curated |