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WormBase Tree Display for CDS: PPA10057

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Name Class

PPA10057EvidenceCurator_confirmedWBPerson4055
SMapS_parentSequencePPA_ChrII
StructureSource_exons (15)
DB_infoDatabasepristionchus.orgcdsgene-UMM-S296-8.50
TREEFAMTREEFAM_IDTF300650
DB_remarkPPA-KAT-1 protein; contains similarity to Pfam domains PF00108 (Thiolase, N-terminal domain), PF02803 (Thiolase, C-terminal domain); contains similarity to Interpro domains IPR002155 (Thiolase), IPR020616 (Thiolase, N-terminal), IPR020617 (Thiolase, C-terminal), IPR016039 (Thiolase-like)
OriginFrom_laboratoryHX
SpeciesPristionchus pacificus
PropertiesCodingCDS
CDS_predicted_bypristionchus.org
Prediction_statusPartially_confirmed
VisibleGeneWBGene00099611
Corresponding_transcriptPPA10057.1
Corresponding_proteinPP75571
Corresponding_oligo_setGPL14372_Probes_82511
GPL14372_Probes_82512
Matching_cDNAFG105210Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14372_Probes_82511
GPL14372_Probes_82512
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010133.4155From_analysisRNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
Last_reviewed08 Nov 2019 16:13:21WBPerson4055
Remark[171116 mh6] renamed from gene-UMM-S296-8.50Curator_confirmedWBPerson4055
[191108 mh6] This gene has been split based on the RNASeq data.Curator_confirmedWBPerson4055
From_analysisRNASeq
Methodcurated