WormBase Tree Display for CDS: OVOC7902a
expand all nodes | collapse all nodes | view schema
| OVOC7902a | SMap | S_parent | Sequence | OVOC_OM3_51 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (11) | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR001390 (Gamma-aminobutyric-acid A receptor, alpha subunit), IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | ||||||
| Start_not_found | 1 | |||||
| Visible | Gene | WBGene00244711 | ||||
| Corresponding_transcript | OVOC7902a.1 | |||||
| Corresponding_protein | OVP14770 | |||||
| Matching_cDNA | ovolvulus_GG320|c32_g1_i9 | Inferred_automatically | transcript_builder.pl | |||
| Brief_identification | Gamma-aminobutyric acid receptor subunit beta homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 1.65315 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 1.55075 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 4.57654 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 5.77029 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 3.2397 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 7.78877 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [150721 jl16] Added new start and end and updated gene model based on RNASeq and protein evidence. | Curator_confirmed | WBPerson28994 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
