WormBase Tree Display for CDS: OVOC7894
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| OVOC7894 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM3_51 | |||
| Structure | Source_exons | 1 | 96 | |||
| 178 | 345 | |||||
| 484 | 672 | |||||
| 784 | 846 | |||||
| 1138 | 1203 | |||||
| 1275 | 1442 | |||||
| 1542 | 1711 | |||||
| 1940 | 2054 | |||||
| DB_info | DB_remark | OVO-MOG-3 protein; contains similarity to Pfam domain PF12542 (Pre-mRNA splicing factor); contains similarity to Interpro domain IPR022209 (Pre-mRNA splicing factor) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00244703 | ||||
| Corresponding_transcript | OVOC7894.1 | |||||
| Corresponding_protein | OVP14291 | |||||
| Matching_cDNA | AA294668 | Inferred_automatically | transcript_builder.pl | |||
| AI438238 | Inferred_automatically | transcript_builder.pl | ||||
| BE132477 | Inferred_automatically | transcript_builder.pl | ||||
| BF400506 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG320|c36_g2_i1 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG320|c36_g5_i5 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 14.1635 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 31.347 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 44.9819 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 5.57013 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 44.3572 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 74.3517 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140515 es9] Splice sites of OVOC7894 gene model corrected using RNA-Seq, protein evidence, SL1 and mRNA data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
