WormBase Tree Display for CDS: OVOC7
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OVOC7 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_1 | |||
Structure | Source_exons (12) | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF00017 (SH2 domain), PF07714 (Protein tyrosine and serine/threonine kinase); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR036860 (SH2 domain superfamily), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR000980 (SH2 domain), IPR020635 (Tyrosine-protein kinase, catalytic domain) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00236816 | ||||
Corresponding_transcript | OVOC7.1 | |||||
OVOC7.2 | ||||||
Corresponding_protein | OVP13067 | |||||
Matching_cDNA | ovolvulus_GG645|c10_g2_i5 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG645|c10_g2_i6 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 0.018391 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 0.013151 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
0.038151 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
0.040087 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 0.251087 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
1.43333 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140304 es9] Splice sites of OVOC7 gene model corrected using RNA-Seq. | Curator_confirmed | WBPerson2062 | |||
Method | curated |