WormBase Tree Display for CDS: OVOC6009
expand all nodes | collapse all nodes | view schema
| OVOC6009 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM2_85 | |||
| Structure | Source_exons (13) | |||||
| DB_info | DB_remark | OVO-GLC-3 protein; contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region); contains similarity to Interpro domains IPR036734 (Neurotransmitter-gated ion-channel ligand-binding domain superfamily), IPR006028 (Gamma-aminobutyric acid A receptor/Glycine receptor alpha), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding domain), IPR015680 (), IPR036719 (Neurotransmitter-gated ion-channel transmembrane domain superfamily), IPR006201 (Neurotransmitter-gated ion-channel), IPR006029 (Neurotransmitter-gated ion-channel transmembrane domain) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00242818 | ||||
| Corresponding_transcript | OVOC6009.1 | |||||
| Corresponding_protein | OVP14036 | |||||
| Matching_cDNA | ovolvulus_GG1427|c6_g2_i6 | Inferred_automatically | transcript_builder.pl | |||
| Brief_identification | GluClalpha homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (12) | |||||
| WBls:0000107 | 3.0449 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 1.71146 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 3.16589 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 3.74451 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| WBls:0000664 | 2.5128 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 3.02141 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140508 es9] Splice sites of OVOC6009 gene model corrected using RNA-Seq and protein evidence data. | Paper_evidence | ||||
| Curator_confirmed | WBPerson2062 | |||||
| Method | curated |
