WormBase Tree Display for CDS: OVOC5997
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OVOC5997 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM2_85 | |||
Structure | Source_exons | 1 | 82 | |||
913 | 1032 | |||||
1378 | 1512 | |||||
3230 | 3411 | |||||
4164 | 4326 | |||||
5646 | 5749 | |||||
6474 | 6605 | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF01549 (ShK domain-like), PF08768 (THAP4-like, heme-binding beta-barrel domain); contains similarity to Interpro domains IPR003582 (ShKT domain), IPR012674 (Calycin), IPR014878 (THAP4-like, heme-binding beta-barrel domain) | ||||
Origin | From_laboratory | MBM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00242806 | ||||
Corresponding_transcript | OVOC5997.1 | |||||
Corresponding_protein | OVP13824 | |||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 37.8317 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 16.9867 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
3.64952 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
4.08549 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 0 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
1.55758 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Remark | [140506 es9] Splice sites of OVOC5997 gene model corrected using RNA-Seq, protein evidence and SL1 data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |