Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: OVOC5997

expand all nodes | collapse all nodes | view schema

Name Class

OVOC5997EvidenceCurator_confirmedWBPerson2062
SMapS_parentSequenceOVOC_OM2_85
StructureSource_exons182
9131032
13781512
32303411
41644326
56465749
64746605
DB_infoDB_remarkcontains similarity to Pfam domains PF01549 (ShK domain-like), PF08768 (THAP4-like, heme-binding beta-barrel domain); contains similarity to Interpro domains IPR003582 (ShKT domain), IPR012674 (Calycin), IPR014878 (THAP4-like, heme-binding beta-barrel domain)
OriginFrom_laboratoryMBM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00242806
Corresponding_transcriptOVOC5997.1
Corresponding_proteinOVP13824
RNASeq_FPKMWBls:0000104 (15)
WBls:000010737.8317From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010816.9867From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
3.64952From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
4.08549From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
WBls:00006640From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
1.55758From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
Remark[140506 es9] Splice sites of OVOC5997 gene model corrected using RNA-Seq, protein evidence and SL1 data.Curator_confirmedWBPerson2062
Methodcurated