WormBase Tree Display for CDS: OVOC5995
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| OVOC5995 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM2_85 | |||
| Structure | Source_exons | 1 | 144 | |||
| 832 | 900 | |||||
| DB_info | DB_remark | OVO-RPL-38 protein; contains similarity to Pfam domain PF01781 (Ribosomal L38e protein family); contains similarity to Interpro domains IPR038464 (Large ribosomal subunit protein eL38 superfamily), IPR002675 (Large ribosomal subunit protein eL38) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00242804 | ||||
| Corresponding_transcript | OVOC5995.1 | |||||
| Corresponding_protein | OVP14011 | |||||
| Matching_cDNA | AI438383 | Inferred_automatically | transcript_builder.pl | |||
| AI603800 | Inferred_automatically | transcript_builder.pl | ||||
| AW313014 | Inferred_automatically | transcript_builder.pl | ||||
| AW562211 | Inferred_automatically | transcript_builder.pl | ||||
| BE491802 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG1441|c8_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | 60S ribosomal protein L38 homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 1481.65 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 1120.25 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | |||
| 2099.72 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 2739.47 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 1776.25 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 3525.24 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140506 es9] Splice sites of OVOC5995 gene model corrected using RNA-Seq, protein evidence, SL1 and mRNA data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
