WormBase Tree Display for CDS: OVOC5993
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OVOC5993 | SMap | S_parent | Sequence | OVOC_OM2_85 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 105 | |||
321 | 543 | |||||
852 | 940 | |||||
DB_info | DB_remark | OVO-SNR-1 protein; contains similarity to Pfam domain PF01423 (LSM domain); contains similarity to Interpro domains IPR001163 (Sm domain, eukaryotic/archaea-type), IPR027141 (Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3), IPR010920 (LSM domain superfamily) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00242802 | ||||
Corresponding_transcript | OVOC5993.1 | |||||
Corresponding_protein | OVP02778 | |||||
Matching_cDNA | ovolvulus_GG1441|c6_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | Small nuclear ribonucleoprotein Sm D3 homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 175.738 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 134.124 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
80.7249 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
95.9449 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 223.149 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
316.879 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Method | curated |