WormBase Tree Display for CDS: OVOC5961
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| OVOC5961 | SMap | S_parent | Sequence | OVOC_OM2_85 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (21) | |||||
| DB_info | DB_remark | OVO-VPS-39 protein; contains similarity to Pfam domains PF00780 (CNH domain), PF10366 (Vacuolar sorting protein 39 domain 1), PF10367 (Vacuolar sorting protein 39 domain 2); contains similarity to Interpro domains IPR019452 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1), IPR019453 (Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2), IPR032914 (Vam6/VPS39/TRAP1 family), IPR001180 (Citron homology (CNH) domain) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00242770 | ||||
| Corresponding_transcript | OVOC5961.1 | |||||
| OVOC5961.2 | ||||||
| Corresponding_protein | OVP04819 | |||||
| Matching_cDNA | ovolvulus_GG1437|c75_g2_i3 | Inferred_automatically | transcript_builder.pl | |||
| ovolvulus_GG1437|c75_g2_i11 | Inferred_automatically | transcript_builder.pl | ||||
| Brief_identification | Vam6/Vps39-like protein homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 9.63955 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 27.3683 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 31.7056 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 9.34981 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 24.7121 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 28.5595 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Method | curated |
