WormBase Tree Display for CDS: OVOC44
expand all nodes | collapse all nodes | view schema
| OVOC44 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_1 | |||
| Structure | Source_exons (41) | |||||
| DB_info | DB_remark | OVO-HUM-7 protein; contains similarity to Pfam domains PF00063 (Myosin head (motor domain)), PF00620 (RhoGAP domain); contains similarity to Interpro domains IPR008936 (Rho GTPase activation protein), IPR029071 (Ubiquitin-like domain superfamily), IPR000159 (Ras-associating domain), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR000198 (Rho GTPase-activating protein domain), IPR036961 (Kinesin motor domain superfamily), IPR000048 (IQ motif, EF-hand binding site), IPR002219 (Protein kinase C-like, phorbol ester/diacylglycerol-binding domain), IPR001609 (Myosin head, motor domain) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00236853 | ||||
| Corresponding_transcript | OVOC44.1 | |||||
| Corresponding_protein | OVP13459 | |||||
| Matching_cDNA | AI205456 | Inferred_automatically | transcript_builder.pl | |||
| Brief_identification | Unconventional myosin-IXb homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 3.50806 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 1.46453 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 6.77261 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 7.42864 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| WBls:0000664 | 17.2451 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
| 20.2389 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
| Remark | [140310 es9] Splice sites of OVOC44 gene model corrected using RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
