WormBase Tree Display for CDS: OVOC2935
expand all nodes | collapse all nodes | view schema
OVOC2935 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_119 | |||
Structure | Source_exons | 1 | 162 | |||
415 | 519 | |||||
997 | 1135 | |||||
1377 | 1528 | |||||
1871 | 1944 | |||||
2283 | 2375 | |||||
2730 | 2828 | |||||
3349 | 3501 | |||||
3718 | 3795 | |||||
4234 | 4366 | |||||
DB_info | DB_remark | contains similarity to Pfam domain PF00704 (Glycosyl hydrolases family 18); contains similarity to Interpro domains IPR017853 (Glycoside hydrolase superfamily), IPR001223 (Glycoside hydrolase family 18, catalytic domain), IPR029070 (Chitinase insertion domain superfamily), IPR011583 (Chitinase II) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00239744 | ||||
Corresponding_transcript | OVOC2935.1 | |||||
Corresponding_protein | OVP00509 | |||||
Brief_identification | Putative chitinase | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 12.057 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 30.5435 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
30.5469 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
9.87998 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 20.1008 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
29.2201 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Method | curated |