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WormBase Tree Display for CDS: OVOC2877

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Name Class

OVOC2877SMapS_parentSequenceOVOC_OM1b_119
StructureSource_exons (13)
DB_infoDB_remarkcontains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF04192 (Utp21 specific WD40 associated putative domain), PF12894 (Anaphase-promoting complex subunit 4 WD40 domain); contains similarity to Interpro domains IPR024977 (Anaphase-promoting complex subunit 4-like, WD40 domain), IPR001680 (WD40 repeat), IPR036322 (WD40-repeat-containing domain superfamily), IPR007319 (Small-subunit processome, Utp21), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily)
OriginFrom_laboratoryMGM
SpeciesOnchocerca volvulus
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00239686
Corresponding_transcriptOVOC2877.1
Corresponding_proteinOVP01401
Matching_cDNAovolvulus_GG543|c251_g2_i2Inferred_automaticallytranscript_builder.pl
Brief_identificationWD-repeat protein, putative homologPerson_evidenceWBPerson2973
RNASeq_FPKMWBls:0000104 (15)
WBls:00001078.11732From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010822.869From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
28.0941From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
7.86846From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
WBls:000066430.5713From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
43.2766From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
Methodcurated