WormBase Tree Display for CDS: OVOC2877
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OVOC2877 | SMap | S_parent | Sequence | OVOC_OM1b_119 | ||
---|---|---|---|---|---|---|
Structure | Source_exons (13) | |||||
DB_info | DB_remark | contains similarity to Pfam domains PF00400 (WD domain, G-beta repeat), PF04192 (Utp21 specific WD40 associated putative domain), PF12894 (Anaphase-promoting complex subunit 4 WD40 domain); contains similarity to Interpro domains IPR024977 (Anaphase-promoting complex subunit 4-like, WD40 domain), IPR001680 (WD40 repeat), IPR036322 (WD40-repeat-containing domain superfamily), IPR007319 (Small-subunit processome, Utp21), IPR015943 (WD40/YVTN repeat-like-containing domain superfamily) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00239686 | ||||
Corresponding_transcript | OVOC2877.1 | |||||
Corresponding_protein | OVP01401 | |||||
Matching_cDNA | ovolvulus_GG543|c251_g2_i2 | Inferred_automatically | transcript_builder.pl | |||
Brief_identification | WD-repeat protein, putative homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 8.11732 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 22.869 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
28.0941 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
7.86846 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 30.5713 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
43.2766 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Method | curated |