WormBase Tree Display for CDS: OVOC2839b

OVOC2839b SMap: S_parent: Sequence: OVOC_OM1b_119
  Structure: Source_exons: 1 137
      253 407
      780 935
      1163 1548
      2409 2524
      2773 2915
      3270 3402
      4333 4489
  DB_info: DB_remark: contains similarity to Pfam domain PF00104 (Ligand-binding domain of nuclear hormone receptor); contains similarity to Interpro domains IPR001723 (Nuclear hormone receptor), IPR016355 (Nuclear hormone receptor family 5-like), IPR000536 (Nuclear hormone receptor, ligand-binding domain), IPR035500 (Nuclear hormone receptor-like domain superfamily)
  Origin: From_laboratory: HX
    Species: Onchocerca volvulus
  Properties: Coding: CDS
      Prediction_status: Partially_confirmed
    Isoform: Curator_confirmed: WBPerson4055
      Feature_evidence: WBsf923252
  Visible: Gene: WBGene00239648
    Corresponding_transcript: OVOC2839b.1
    Corresponding_protein: OVP14629
    Brief_identification: Nuclear hormone receptor family member nhr-25 homolog Person_evidence: WBPerson2973
    RNASeq_FPKM: WBls:0000104 (14)
      WBls:0000107 7.59166 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
      WBls:0000108 15.2445 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
        22.6415 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
        6.17153 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
      WBls:0000664 0.525014 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
        0.563631 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
    Remark: [141105 mh6] Created this isoform based on the RNASeq splice data and the SL1 site. Curator_confirmed: WBPerson4055
        Feature_evidence: WBsf923252
        From_analysis: RNASeq
  Method: curated