WormBase Tree Display for CDS: OVOC2485
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| OVOC2485 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM1b_115 | |||
| Structure | Source_exons | 1 | 203 | |||
| 615 | 690 | |||||
| 1029 | 1541 | |||||
| 2047 | 2202 | |||||
| 2452 | 2781 | |||||
| DB_info | DB_remark | contains similarity to Pfam domains PF00106 (short chain dehydrogenase), PF04930 (FUN14 family); contains similarity to Interpro domains IPR036291 (NAD(P)-binding domain superfamily), IPR002347 (Short-chain dehydrogenase/reductase SDR), IPR007014 (FUN14) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00239294 | ||||
| Corresponding_transcript | OVOC2485.1 | |||||
| Corresponding_protein | OVP14290 | |||||
| Brief_identification | Dehydrogenase/reductase SDR family protein 7-like homolog | Person_evidence | WBPerson2973 | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 23.7387 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 26.5386 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 27.2688 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 30.2357 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| WBls:0000664 | 29.4927 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 30.7553 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140506 es9] Splice sites of OVOC2485 gene model corrected using RNA-Seq, protein evidence, SL1 and mRNA data. | |||||
| Method | curated |
