WormBase Tree Display for CDS: OVOC17
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OVOC17 | Evidence | Curator_confirmed | WBPerson4055 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OM1b_1 | |||
Structure | Source_exons | 1 | 63 | |||
11400 | 11603 | |||||
13025 | 13288 | |||||
13633 | 13792 | |||||
14500 | 14715 | |||||
14874 | 14991 | |||||
15090 | 15267 | |||||
DB_info | DB_remark | OVO-DMSR-2 protein; contains similarity to Pfam domain PF10324 (Serpentine type 7TM GPCR chemoreceptor Srw); contains similarity to Interpro domains IPR019427 (7TM GPCR, serpentine receptor class w (Srw)), IPR000276 (G protein-coupled receptor, rhodopsin-like) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00236826 | ||||
Corresponding_transcript | OVOC17.1 | |||||
Corresponding_protein | OVP14777 | |||||
Matching_cDNA | ovolvulus_GG641|c32_g4_i2 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG641|c32_g4_i3 | Inferred_automatically | transcript_builder.pl | ||||
ovolvulus_GG641|c32_g4_i4 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 7.61178 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 3.97415 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
6.79123 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
7.37763 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
WBls:0000664 | 1.9182 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | |||
2.23341 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | ||||
Last_reviewed | 26 Jun 2018 14:54:14 | WBPerson4055 | ||||
Remark | [180626 mh6] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4055 | |||
From_analysis | RNASeq | |||||
Method | curated |