WormBase Tree Display for CDS: OVOC157
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OVOC157 | SMap | S_parent | Sequence | OVOC_OM1b_5 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 119 | |||
455 | 625 | |||||
743 | 812 | |||||
1412 | 1498 | |||||
2048 | 2212 | |||||
2487 | 2588 | |||||
2752 | 2916 | |||||
4655 | 4884 | |||||
5437 | 5674 | |||||
DB_info | DB_remark | OVO-UNC-73 protein; contains similarity to Pfam domain PF00621 (RhoGEF domain); contains similarity to Interpro domains IPR000219 (Dbl homology (DH) domain), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR011993 (PH-like domain superfamily) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00236966 | ||||
Corresponding_transcript | OVOC157.1 | |||||
OVOC157.2 | ||||||
Corresponding_protein | OVP08305 | |||||
Matching_cDNA | ovolvulus_GG633|c82_g3_i4 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG633|c82_g3_i6 | Inferred_automatically | transcript_builder.pl | ||||
ovolvulus_GG633|c82_g3_i9 | Inferred_automatically | transcript_builder.pl | ||||
ovolvulus_GG633|c82_g3_i13 | Inferred_automatically | transcript_builder.pl | ||||
Brief_identification | Rho guanine nucleotide exchange factor 25 homolog | Person_evidence | WBPerson2973 | |||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 4.43755 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 14.8851 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
19.0849 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
3.89474 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
WBls:0000664 | 8.72058 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
8.9939 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Method | curated |