WormBase Tree Display for CDS: OVOC12231
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OVOC12231 | Evidence | Curator_confirmed | WBPerson2062 | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | OVOC_OO_000003 | |||
Structure | Source_exons (19) | |||||
DB_info | DB_remark | OVO-DAAM-1 protein; contains similarity to Pfam domains PF02181 (Formin Homology 2 Domain), PF06367 (Diaphanous FH3 Domain), PF06371 (Diaphanous GTPase-binding Domain); contains similarity to Interpro domains IPR010473 (Formin, GTPase-binding domain), IPR010472 (Formin, FH3 domain), IPR015425 (Formin, FH2 domain), IPR042201 (Formin, FH2 domain superfamily), IPR011989 (Armadillo-like helical), IPR016024 (Armadillo-type fold) | ||||
Origin | From_laboratory | MGM | ||||
Species | Onchocerca volvulus | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00249040 | ||||
Corresponding_transcript | OVOC12231.1 | |||||
Corresponding_protein | OVP13677 | |||||
Matching_cDNA | ovolvulus_GG446|c51_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
ovolvulus_GG446|c52_g4_i3 | Inferred_automatically | transcript_builder.pl | ||||
RNASeq_FPKM | WBls:0000104 (15) | |||||
WBls:0000107 | 0.967551 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
WBls:0000108 | 0.471452 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
18.5506 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
5.26827 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
WBls:0000664 | 1.29929 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
2.08763 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
Remark | [140605 es9] Merged OVOC12231, OVOC12232 and OVOC12233 based on RNA-Seq and protein evidence data. | Curator_confirmed | WBPerson2062 | |||
Method | curated |