WormBase Tree Display for CDS: OVOC10831
expand all nodes | collapse all nodes | view schema
| OVOC10831 | SMap | S_parent | Sequence | OVOC_OM4_111 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 160 | |||
| 516 | 625 | |||||
| 831 | 994 | |||||
| 1250 | 1354 | |||||
| 1454 | 1616 | |||||
| 1690 | 1869 | |||||
| 2012 | 2081 | |||||
| 2261 | 2328 | |||||
| DB_info | DB_remark | OVO-SGT-1 protein; contains similarity to Pfam domains PF00515 (Tetratricopeptide repeat), PF16546 (Homodimerisation domain of SGTA); contains similarity to Interpro domains IPR019734 (Tetratricopeptide repeat), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR032374 (SGTA, homodimerisation domain), IPR001440 (Tetratricopeptide repeat 1) | ||||
| Origin | From_laboratory | MGM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00247640 | ||||
| Corresponding_transcript | OVOC10831.1 | |||||
| Corresponding_protein | OVP02411 | |||||
| Matching_cDNA | AI511578 | Inferred_automatically | transcript_builder.pl | |||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 128.795 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 103.611 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | |||
| 105.343 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | ||||
| 131.024 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| WBls:0000664 | 101.279 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 121.477 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Method | curated |
