WormBase Tree Display for CDS: M01E5.5b
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| M01E5.5b | Evidence | Inferred_automatically | make_isoforms.pl | ||
|---|---|---|---|---|---|
| SMap | S_parent | Sequence | M01E5 | ||
| Structure | Source_exons | 1 | 399 | ||
| 1610 | 3091 | ||||
| 3141 | 3383 | ||||
| 4162 | 4242 | ||||
| DB_info | Database | KEGG | KEGG_id | 5.6.2.1 | |
| SwissProt | UniProtAcc | O17966 | |||
| UniProtIsoformAcc | O17966-2 | ||||
| UniProt | UniProtAcc | O17966 | |||
| UniProt_GCRP | UniProtAcc | O17966 | |||
| AlphaFold | entry | O17966 | |||
| NCBI_protein | GI_number | GI:3878631 | |||
| Protein_id | CHROMOSOME_I | CAB07639 | 1 | ||
| DB_remark | TOP-1 protein; contains similarity to Pfam domains PF01028 (Eukaryotic DNA topoisomerase I, catalytic core), PF02919 (Eukaryotic DNA topoisomerase I, DNA binding fragment), PF14370 (C-terminal topoisomerase domain); contains similarity to Interpro domains IPR014711 (DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type), IPR013500 (DNA topoisomerase I, catalytic core, eukaryotic-type), IPR001631 (DNA topoisomerase I), IPR013499 (DNA topoisomerase I, eukaryotic-type), IPR011010 (DNA breaking-rejoining enzyme, catalytic core), IPR025834 (Topoisomerase I C-terminal domain), IPR036202 (DNA topoisomerase I, DNA binding, eukaryotic-type, N-terminal domain superfamily), IPR013030 (DNA topoisomerase I, DNA binding, N-terminal domain 2), IPR008336 (DNA topoisomerase I, DNA binding, eukaryotic-type), IPR014727 (DNA topoisomerase I, catalytic core, alpha/beta subdomain), IPR013034 (DNA topoisomerase I, DNA binding, N-terminal domain 1) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Accession_evidence | NDB | BJ105552 | ||
| Inferred_automatically | transcript_builder | ||||
| Visible (11) | |||||
| Method | curated |
