WormBase Tree Display for CDS: H40L08.2b
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| H40L08.2b | SMap | S_parent | Sequence | H40L08 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 66 | |||
| 122 | 311 | |||||
| 374 | 435 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | D5MCV4 | ||
| UniProt | UniProtAcc | D5MCV4 | ||||
| AlphaFold | entry | D5MCV4 | ||||
| NCBI_protein | GI_number | GI:293324823 | ||||
| Protein_id | CHROMOSOME_X | CBL43448 | 1 | |||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | EB994897 | |||
| EC008811 | ||||||
| Visible | Gene | WBGene00014793 | ||||
| Corresponding_transcript | H40L08.2b.1 | |||||
| Corresponding_protein | CE44753 | |||||
| Corresponding_oligo_set | 174393_at | |||||
| A_12_P150140 | ||||||
| A_12_P150141 | ||||||
| A_12_P150142 | ||||||
| A_12_P150143 | ||||||
| A_12_P150144 | ||||||
| GPL19516_CGZ0027019 | ||||||
| GPL19516_CGZ0027021 | ||||||
| GPL21109_H40L08.2a | ||||||
| GPL21109_H40L08.2c | ||||||
| Matching_cDNA | male_Nanopore_Roach_10998 | |||||
| adult_Nanopore_Roach_8521 | ||||||
| L2_Nanopore_Roach_12167 | ||||||
| adult_Nanopore_Roach_66818 | ||||||
| L1_Nanopore_Roach_64961 | ||||||
| adult_Nanopore_Roach_8926 | ||||||
| L4_Nanopore_Roach_41917 | ||||||
| L3_Nanopore_Roach_61607 | ||||||
| EC008811 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results (11) | ||||||
| Brief_identification | Ovule protein | Accession_evidence | UniProt | TR:D5MCV5 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 10 Aug 2016 17:59:43 | WBPerson1983 | ||||
| Remark | [070705 pad] A modular 3 pseudogene splice variant. | Accession_evidence | NDB | EB994897 | ||
| EC008811 | ||||||
| Curator_confirmed | WBPerson1983 | |||||
| [100312 pad] Converted this loci into a coding loci as it appears that the splice 5' UTR is conserved in other nematodes and that they all utilise a start site within exon 3 of the locus. I have created a 3rd Isoform to represent the full length transcript starting at the 1st atg within the transcript population. RNAseq only confirms the expression of the coding portions of the locus. | Protein_id_evidence | RP:RP00777 | ||||
| CN:CN09879 | ||||||
| JA:JA34366 | ||||||
| Curator_confirmed | WBPerson1983 | |||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Method | curated |
